| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1629 |
|---|
| Symbol | |
|---|
| ID | 4581009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 1610564 |
|---|
| End bp | 1611091 |
|---|
| Gene Length | 528 bp |
|---|
| Protein Length | 175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639768944 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_915423 |
|---|
| Protein GI | 119384367 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.459809 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGATTT TGGCTGCTGC GATGTCTTCC GGCGACAGTG ACAAGGTTGG CCGCCTCTAC
CTCGACGAAG GCGCGCGGCT GGAACGCCAG ATCGCGCGGC GTATCGGCAA TCGCAGCATC
GCCCGCGACT TGGTGCACGA CGTCTTTCTG CGCTTCTGGG AGCGCGCGGG CGAGTTGCGC
GGCAACCCCG CCGCCTTCGT GACCCGCTCG GCCCGCAATG TCGCCATCGA CCATCTGCGC
CGCGAAAAGG TGCGCAATGC GCATGCGGCC GCTATCGAGC CCCCTTCCCC GCCGCGGGAT
CCGGCCTTCG ACGCCCTGTC GGCGCGCCAG TCGGGCGATG CGGTCCGCAA GGCCATCGAG
GCCCTGCCCG AAACCACGCG CCGGCTTTTC CTGATGAACC GCGCGCAAGG GCTGAGCTTT
CATGAGATCG CCGCGATTTG TGGCATGTCC GAACGGAACG TGGCAAAACA CATGGCGAAG
GCCGTGGCAT GCTGCGCCCG GGCCCTGGAA GACCTTCGCA ACGAATGA
|
|---|
| Protein sequence | MRILAAAMSS GDSDKVGRLY LDEGARLERQ IARRIGNRSI ARDLVHDVFL RFWERAGELR
GNPAAFVTRS ARNVAIDHLR REKVRNAHAA AIEPPSPPRD PAFDALSARQ SGDAVRKAIE
ALPETTRRLF LMNRAQGLSF HEIAAICGMS ERNVAKHMAK AVACCARALE DLRNE
|
|---|
| |