| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1092 |
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| Symbol | |
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| ID | 4578788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 1066114 |
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| End bp | 1067916 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639768411 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_914896 |
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| Protein GI | 119383840 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTTA CCGGTGGACA AGTCGTAGCG CGTGCGCTCA GGGAATACGG CGTCGAATAT
GTCGCGGGCG TGCCGGGCCA CGGCATCTGG TCGCTGTTCG ACGCCTTCCT GCAGGAAGGC
TCCGAGATCC CCTTCATCCA GGTCATGCAC GAGCAGAGTG CCGTCCATAT GGCGGATGGT
TATTTCCGCG CCTGCGGCAA GCCGATGGCC TGCTCGACCT CGGTCGGGCC GGGGGCGGCG
AACACGATCA TCGGCCTGGC GACCGCCTAT ACCGATTCGA CGGCGGTGTT CTATGTCTCC
GGCTCGCCCC AGACCTACAT GCAGGGCCAC GGCACCATGC AGGAGATCGA GCGTCGGCAG
GACAACGCCT TCCCGCGCAT CACCGAACAG GTGACCAAGC GCGCCTGGCA GGCCCATTCG
GTCAGGACGC TGCCCTCGAT CATGCACCGC GCCTTCAGCG AAATGCTGAC CGGCCGCCCC
GGCCCGGTTC ATGTCGAGGT CCCGATGGAC GTTCAGGTCG AGGCCGAGGA GGTCACCATC
CATCCGCTGG ACAAGCGCCT GCCCGTCGGC GTCGCTTATC CCGATCCCAA GGCGATCGAG
GCGGCCGCCA AGGTGCTGTT GTCGGCCCGC CGCCCGGTGA TCGTCGCCGG CGGCGGGGCG
ATCACGGCAA ACGCCACGCA AGAGTTGACC GCGCTGGCCG AAAAGCTGGG CGCGGCCGTG
TCGATCACCT GGAACGGCAA GGGGGCCATC GCCGAGGACA ACGAGTTGTT CATCGGCGCC
GTCGGCCAGA CCGGCACCAC CTGCGGCAAC CAGATCACCG CCTCGGCCGA TGTGGTGGTC
TCGGTGGGCT GCCGCTTCAC CGACTGGTCG GCCTCGTCCT ATGCCAAGGG CGTGTCCTTC
AGCTTCCCGC CCGGCAAGCT GATCCATATC GACCTGGACC CGCGCGAGAT CGGCAAGACC
TATCCGACCG AGGTCGGCAT CGTCTCGGAC GCGAAGATCG CGCTTGGCCA GCTGCTGGAG
GCGATCGGCG ATGCCGACGC TGCTGCACTG CGCGACCGCA ACGCCGATTT CCACGCCGAT
GTGCACAAGG CCAAGGCAGA TTGGCGCGCA CAGGTCGAAC CGCGCGAAAG CAGCCGCGAG
ACCCCCTTTA CCTCGCAGCG GCCGCTGGTC GCGCTGCGCA AGGTGCTGCC GCGCGACGGG
ATCGTCGTGG TCGGCTCGGG CAACACCCAA GGCTCGGTCA AGCAGAGCTT CCCGGTCTAT
GAGCCGCGCA CGCATCTGAC CTCGGGTTCC TATTCGCCGA TGGGCTGGGC GGTGCCGGCG
GCCATGGGCG CCAAGCTGGC CTGTCCGGAA AAGAAGGTCG TGGCCATCGT CGGCGACGGC
GACTTCATGA TGTCCTTGCC GGAAATGGGC ACCGCCGTGA TGAACGGCAT CAATGTGGTG
TTCCTGGTGC TGAACAACCA GGGCTACATG TCGATCCGCG GCGGCCAGCG GAAGTTCATG
GGTCGTCACA TCGCGTCCGA GTTCAATCGC CATGCCGGTA ACGGCGAGCC TTATTCTGCC
GATCTTACCG CCACCGCCAA GGCCTTTGGC CTGGAGGCCT GGAAAGTGGA GAAGGACGAA
GATCTGGAAT CGACGCTGGA AAAAGCGCTG AACACCGACG GCCCGACGCT GGTCGAGGTG
ATCGTGTCGC GCGACGCCGC CGGCCCCTTC GCCACCGGCT GGTGGGATTT CCCCTCGCCC
GCCTATTACG AAAAAGAGCA GGAAGCCTAT GCCGAGATGC GCGCGAAAGA GCAGATGCTC
TGA
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| Protein sequence | MKLTGGQVVA RALREYGVEY VAGVPGHGIW SLFDAFLQEG SEIPFIQVMH EQSAVHMADG
YFRACGKPMA CSTSVGPGAA NTIIGLATAY TDSTAVFYVS GSPQTYMQGH GTMQEIERRQ
DNAFPRITEQ VTKRAWQAHS VRTLPSIMHR AFSEMLTGRP GPVHVEVPMD VQVEAEEVTI
HPLDKRLPVG VAYPDPKAIE AAAKVLLSAR RPVIVAGGGA ITANATQELT ALAEKLGAAV
SITWNGKGAI AEDNELFIGA VGQTGTTCGN QITASADVVV SVGCRFTDWS ASSYAKGVSF
SFPPGKLIHI DLDPREIGKT YPTEVGIVSD AKIALGQLLE AIGDADAAAL RDRNADFHAD
VHKAKADWRA QVEPRESSRE TPFTSQRPLV ALRKVLPRDG IVVVGSGNTQ GSVKQSFPVY
EPRTHLTSGS YSPMGWAVPA AMGAKLACPE KKVVAIVGDG DFMMSLPEMG TAVMNGINVV
FLVLNNQGYM SIRGGQRKFM GRHIASEFNR HAGNGEPYSA DLTATAKAFG LEAWKVEKDE
DLESTLEKAL NTDGPTLVEV IVSRDAAGPF ATGWWDFPSP AYYEKEQEAY AEMRAKEQML
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