| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0609 |
|---|
| Symbol | |
|---|
| ID | 4579653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 584724 |
|---|
| End bp | 586553 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639767927 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_914417 |
|---|
| Protein GI | 119383361 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0436309 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.62528 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGACA CGAAGCCGCT GGTCAGGATC GAGGGGTTGC GGGTCGAGTT CCAGACCCAT
GACGGCCCGG TCACGGGCGT CGAGGATCTG TCCTTCGACA TCCGGCCCGG CGAATGCCTT
TGCGTGGTGG GCGAATCCGG CTCGGGCAAA TCGGTCAGTT CGCTGTCGCT GATGCGGCTG
GTGGAATTCG GCGGCGGCGA GATCGCCAAT GGCCGGCTGC TGTTCCAGCG CGAGCGGGAC
GAGATCGACC TCGCCAAGGC CCCGCCCGCC GCGATGCGCG ACATTCGCGG CAACGAGATC
GCGATGATCT TCCAGGAGCC GATGACGGCG CTGAACCCGG TCTTTACCGT GGGCGAGCAG
CTGGCCGAGG GGCTGATCGT GCATCGCGGC CTGACGCGCG CCCAGGCCCG CGCCCGCGCG
CCGGAGCTGT TGCACGAGGT GCGCATCCCC GAACCCGAGC GGCGGTTGCG GCAGTATCCG
CACGAGCTTT CGGGCGGGAT GCGCCAGCGC GTCGTCATCG CCATGGCGAT GGCTTGCCGC
CCGCGCCTGC TGATCTGCGA CGAGCCGACC ACGGCGCTGG ACGTGACCAT CCAGGCCGAG
ATCCTGACCC TGATCGACCG CCTGAAGCGC GAGACCGGCA TGGCGGTGCT GTTCATCACC
CATGACATGG CGGTGGTGGC GCAGATGGCC GACCGCGTCG TGGTCATGTT CCGCGGCAAC
AAGGTCGAGG AAGGCCCGGT CGGCCAGATC TTCGAAGCCC CGCGCGAGCC TTATACCCAG
GCGCTGCTTG CCGCCGTGCC GCGGCTGGGC GAGATGACCG GGCGCGATGC GCCCGAGCCG
ATGCGGCTGA TGCGCGAGGG GCAGGTGGCG CGGCCCGAGC CCGTGATCCC GCCTGCGCCC
GCGCCGCTGC TGGTGGTCAG GAACCTTTGC ACCCGCTTTG CGGTCAAGGG CGGCATCCTG
CGCCGCACCG TGGCGCAGGT CCATGCGGTC GAGGACGTCT CCTTTACCGT CAATGCCGGC
GAGACCCTGT CGCTGGTGGG CGAATCGGGC TGCGGCAAGT CCACCACCGG ACGCTCGATC
CTGCGGCTGG TCGAGCCGAG TTCGGGCCAG GTCAGCCTTG GCGGGCGCGA CATCCTGGCC
CTGGGTGCAT CTGATCTGCG CAAGGCGCGG CGCGACATGC AGATGATCTT CCAGGACCCG
TTCGCCAGCC TCGACCCGCA GATGCGCCTG CTCGACCAGA TCGAGGAGCC GATGCTGAAC
TACGGCATCG GCAACCGCGT CGAGCGCCGA GACCGCATCG CCCGGCTTTT CGACCGGGTG
GAACTGCCGC GCGGCTTCAT GAAGCGTTAC CCGCACGAGC TGTCGGGCGG CCAGCGCCAG
CGCATCGCCA TCGCCCGCGC CCTGGCGCTG AACCCGAAGC TCATCATCGC CGACGAGGCG
GTCTCGGCGC TGGACGTTTC GGTGCAGGCG CAGGTGCTGA ACCTGCTGAT GGAATTGCAG
CGCGACCTTG GCATCTCGAT GCTGTTCATC AGCCATGACA TGGCGGTGGT CGAGCGCGTC
AGCCATCATG TCGGCGTCAT GTATCTGGGC CGCATCGTCG AGATCGGCAC CCGCAGGCAG
GTCTTCGAGA ACCCGCAGCA CGGCTATACC CGCCAGTTGA TGGCCGCCGT GCCGGTCGCC
GATCCGCGCC GCCGCAAGAT CGGCGAGGAC CTGCGCTTTC GTCCCATCCC CTCGCCGATC
CATCCCGTCG GCCATGTGCC CGCGCCCTCG GTCTATCGCG AGGTGGCGCC CGGCCATCTG
GTGCTGGCCG AGCCGGCGAC GCATGGATAA
|
|---|
| Protein sequence | MLDTKPLVRI EGLRVEFQTH DGPVTGVEDL SFDIRPGECL CVVGESGSGK SVSSLSLMRL
VEFGGGEIAN GRLLFQRERD EIDLAKAPPA AMRDIRGNEI AMIFQEPMTA LNPVFTVGEQ
LAEGLIVHRG LTRAQARARA PELLHEVRIP EPERRLRQYP HELSGGMRQR VVIAMAMACR
PRLLICDEPT TALDVTIQAE ILTLIDRLKR ETGMAVLFIT HDMAVVAQMA DRVVVMFRGN
KVEEGPVGQI FEAPREPYTQ ALLAAVPRLG EMTGRDAPEP MRLMREGQVA RPEPVIPPAP
APLLVVRNLC TRFAVKGGIL RRTVAQVHAV EDVSFTVNAG ETLSLVGESG CGKSTTGRSI
LRLVEPSSGQ VSLGGRDILA LGASDLRKAR RDMQMIFQDP FASLDPQMRL LDQIEEPMLN
YGIGNRVERR DRIARLFDRV ELPRGFMKRY PHELSGGQRQ RIAIARALAL NPKLIIADEA
VSALDVSVQA QVLNLLMELQ RDLGISMLFI SHDMAVVERV SHHVGVMYLG RIVEIGTRRQ
VFENPQHGYT RQLMAAVPVA DPRRRKIGED LRFRPIPSPI HPVGHVPAPS VYREVAPGHL
VLAEPATHG
|
|---|
| |