| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0408 |
|---|
| Symbol | |
|---|
| ID | 4578695 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 377546 |
|---|
| End bp | 378247 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639767725 |
|---|
| Product | helix-turn-helix, type 11 domain-containing protein |
|---|
| Protein accession | YP_914218 |
|---|
| Protein GI | 119383162 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2378] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.855844 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGCA CCGACCGGCT GATGCGCCTG ATGGATGCGT TGCGCCGCCT GCCCGCGCCG
GTGACGGCCG CGCGGCTGGC CGAAGAGACC GGCGTCTCGC GCCGCCAGCT TTACCGCGAC
ATCGCCACGC TGCGCGCTGG CGGCGCGCTG ATCGACGGCG AGGCGGGGCT GGGCTATGCG
CTGACCGAGG ATCCGGCGCT GCCGCCGCAA AGCTTTTCGC GGCTGGAGAT CGAGGCGCTG
CTGCTGGCTA TTTCGGGGCT GCGCACGCTG GGCGATCCCG AACTGACCCG CGCGGGCGAG
GATGCGCTGG CCCGCATCAT CGCCACCCTG CCGGAAAGCC AGGGCCGCCA TGCCATGCAC
ACCACCATGC GGCTGTTTCG CGCGCCGGCG CAGCGTCCCA GCCCGCAGGT GGACATGGCG
CTGCTGCGCG CGGCCCTGTG GGAAGAGCGC AGCCTGGTCA TCGATTATCT CGACCTGCAC
GACGCCGCCA CGACGCGCGA GATCTGGCCG CTGGGCCTCA GCTACAGCGA CAATCACATG
ATGCTGCTGG CGCATTGCAA GCTGCGCGAG GATTTCCGCA CCTTCCATGT GCCGCGCATC
CGGGCCATGC GTCCCGGCGG CACCAGCTTT CGCCCGCGCC GCGTGGCCCT GGTGCGGGAA
TATATCTCGC GTCCCTGCGC TACTCGGCCG CAATCGGGGT AA
|
|---|
| Protein sequence | MSRTDRLMRL MDALRRLPAP VTAARLAEET GVSRRQLYRD IATLRAGGAL IDGEAGLGYA
LTEDPALPPQ SFSRLEIEAL LLAISGLRTL GDPELTRAGE DALARIIATL PESQGRHAMH
TTMRLFRAPA QRPSPQVDMA LLRAALWEER SLVIDYLDLH DAATTREIWP LGLSYSDNHM
MLLAHCKLRE DFRTFHVPRI RAMRPGGTSF RPRRVALVRE YISRPCATRP QSG
|
|---|
| |