Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_0002 |
Symbol | rho |
ID | 4579420 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | + |
Start bp | 709 |
End bp | 2013 |
Gene Length | 1305 bp |
Protein Length | 434 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 639767313 |
Product | transcription termination factor Rho |
Protein accession | YP_913815 |
Protein GI | 119382759 |
COG category | [K] Transcription |
COG ID | [COG1158] Transcription termination factor |
TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00303251 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.950818 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCGGA TAGTGCGCGC CCATAGGCTA GACATGACCG AAGAACGCCT CAACCTGTCC GATCTCAAGG CCAAGAGCCC GGCCGACCTG CTGGCCATGG CCGAGGAGTG GGAAATCGAG AACGCCTCGA CCATGCGCAA GGGCGAGATG ATGTTCTCGA TCCTCAAGGA GCATGCCGAG GAAGGCTTCG AGATCGGCGG CGACGGCGTG CTGGAGGTTG TCCAGGACGG TTTCGGCTTC CTGCGCTCGC CCGAGGCGAA CTATCTGCCA GGGCCCGACG ACATCTATGT CAGCCCCGAC ATGATCCGCC AGCACAGCCT GCGCACCGGC GACACGGTCG AGGGCGTGAT CCGCGCCCCG GGCGAGAACG AACGGTATTT CGCCCTGACC AAGGTCGAGA AGATCAACTT CGAGAATCCC GAGAAAGCCC GCCACAAGGT CGCCTTCGAC AACCTGACGC CGCTTTATCC GAACGAACGC CTGAAGATGG AGATCGAGGA TCCGACCATC AAGGACCGTT CGGCCCGGAT CATCGACCTG GTGGCGCCGA TCGGCAAGGG CCAGCGTTCG TTGATCGTGG CGCCGCCGCG CACCGGCAAG ACGGTGTTGC TGCAGAACAT CGCCCATTCG ATCGAGAAAA ATCACCCGGA ATGCTATCTG ATCGTGCTGC TGATCGACGA GCGGCCGGAA GAGGTGACCG ATATGCAGCG TTCCGTGAAA GGCGAGGTGA TTTCCTCGAC CTTCGACGAA CCGGCCAGCC GGCACGTCGC CGTGTCGGAG ATGGTGATCG AGAAGGCCAA GCGCCTTGTC GAACATAAAC GAGATGTTGT GATTCTTCTG GATTCTATCA CAAGACTTGG TAGAGCCTTC AACACCGTGG TGCCTAGTTC GGGCAAGGTC CTGACCGGCG GTGTCGACGC GAATGCCTTG CAGCGTCCGA AGCGATTCTT TGGCGCGGCC CGGAATATCG AAGAGGGCGG TTCGCTGACC ATCATCGCTA CGGCGCTGAT CGATACCGGC TCGCGTATGG ATGAGGTGAT CTTCGAGGAA TTCAAGGGCA CCGGCAACAG CGAGATCGTG CTGGATCGCA AGGTGGCCGA CAAGCGCGTG TTCCCGGCCA TGGATATTCT CAAGTCCGGC ACCCGCAAAG AAGAATTGCT GGTCGATGCC AAGGATCTGC AAAAGACCTA TCTGCTGCGG CGCATCCTGA ACCCGATGGG GACCACGGAT GCCATCGAAT TCCTGATCTC GAAGCTGAAG CAGACCAAGA CCAATGGCGA ATTCTTCGAT TCGATGAACG CCTGA
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Protein sequence | MRRIVRAHRL DMTEERLNLS DLKAKSPADL LAMAEEWEIE NASTMRKGEM MFSILKEHAE EGFEIGGDGV LEVVQDGFGF LRSPEANYLP GPDDIYVSPD MIRQHSLRTG DTVEGVIRAP GENERYFALT KVEKINFENP EKARHKVAFD NLTPLYPNER LKMEIEDPTI KDRSARIIDL VAPIGKGQRS LIVAPPRTGK TVLLQNIAHS IEKNHPECYL IVLLIDERPE EVTDMQRSVK GEVISSTFDE PASRHVAVSE MVIEKAKRLV EHKRDVVILL DSITRLGRAF NTVVPSSGKV LTGGVDANAL QRPKRFFGAA RNIEEGGSLT IIATALIDTG SRMDEVIFEE FKGTGNSEIV LDRKVADKRV FPAMDILKSG TRKEELLVDA KDLQKTYLLR RILNPMGTTD AIEFLISKLK QTKTNGEFFD SMNA
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