Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcryo_1954 |
Symbol | |
ID | 4035154 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter cryohalolentis K5 |
Kingdom | Bacteria |
Replicon accession | NC_007969 |
Strand | - |
Start bp | 2411470 |
End bp | 2413722 |
Gene Length | 2253 bp |
Protein Length | 750 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637974426 |
Product | type II and III secretion system protein |
Protein accession | YP_581215 |
Protein GI | 93006778 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0109975 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCAGTT CTCATAATTT TTCAGTCACA CCTTTGCATC ATATTTTGCA GCGTTTGATG CGATTGTGCC GTCCTCTTTG CTTGGCCATA CCACTATGGG CGGCTAGTAC TGGGCTGGTG AGTGCTGAAA GCTGGAAAGT CAATTTGCAA GATGCTGATA TCAAAGCCTT TATCAATGAA GTGGCGACGA TTACCAATCA AAACTTCGTC CTTGATCCGC GCATCAACGG TAATGTGACT GTGATCTCCA ACAAGCCTTT GTCGCGTGAT GAGATTTATC AGCTGTTTTT GAGCGTGATG CAAGTCAACG GTATCGCTGC TATCGATTCA GGTACAACGA TTAAACTGGT GCCAGATAAC GTCGCCAAAC AAACCGGTGT TGCTGTTGAT TTACGTGGTG AGAGCGTCGG TGAAACCTTG GCAACGCGGG TGATTTATCT GACGAATACT CAAGCAGCAG AAGTCTTGGG CGTTATCCGT CCGCTCATGC CACCGTCTGC ACATGCCGCT GCTGTGCCTG GAGTCAATGC CTTAGTGCTG TCCGATCGTG CTGATAGCCT AAATCAGCTG ACAGCGCTTA TCCGTGATTT AGACAGTAAT GTGAATGACA GCTTACAAGT CATACCACTA CGTCATGTCG ATGCCGAACG TATGATGGAG TTGATTAGCG CACTGGTGGC GAGTGCTGGT AGCGGCCAGG CAACTGGCAA CAATCAGCTA AAGGTTATCG CCGACACGGC GAGCGACAGA CTGTTGGTTA AAGGCAGTCC TGAGATGATT GCCAAGGTTC AAGAGATGGT CAATCAATTG GACACAACGC CATCAAGGCG CTTAAGTGGT CTGCGTGTTT TCCGCCTAAA ATATGCCAGT GCCGGTCATA TTGCTGAGAT GCTGCGCGGT CTCCTTGCCA GCCAATCAAT CAATAGCTCT GGTGGTTCTT CAACATTAGA GTCAGCATCA TTGAATGATG CCGCTGCTAC AGGGTCGTCG CTAACTGGTG GTGCTAATAG TAAGGTAGGT AGCAATAGTA TCGGTGGTAC TGCTGCTACG CCTTTACCGA ATAATAGTTC CGCGGGTACA AGTATCGGTA TCGGTGGTCG ACCTTTTAGT ATTATCGCTG ATGAAACTCA AAACGCCGTC ATTGTTAATG CAGCACCTGA GCTGATGTTT GAGATCGAAG ACGCTGTCAA TCAGTTAGAC AGCCGCCGCT CGCAAGTATT GATTCAAGCA GCTATTGTTG AAGTGTCGGG CGATGATGCA ACGCAGCTTG GGGTTCAGTG GGCGCTAGGT AATGCCAATA GCGGTTATGG CGTGGTGAAC TTCAATAATG TGGGCGCAAG TGCAGTTTCA CTTGCCGCTG CTGCTTTGTC AGGTGGTACA GGGATAAGCG CAGCAGCAGG CTCCATTGCT GGTGCTTTGT TAGGTATTGG CAGTAGTAGT AAAGACAGCA AAGGCAATGC GCAGTTCTAT GGTGCTATCT TGCAAGCGCT TGATTCTTCT ACCAGCGCCA ATCTGCTATC TATGCCATCG ATTTTGACCT TGGACAATGA AAAAGCCAGT ATCTTAGTGG GTCAGAACGT GCCGTTTGTG ACAGGCTCCT ACACGACGGG TAGTGACTCT TCGACGAACC CCTTTCAAAC GATTGATCGC CAAGATATTG GTATCAATCT AAACGTCATC CCGCATATTG GTGCAAACGG CACCGTACGT TTAGAGGTAT CACAGGAAGT CTCTTCAGTC GTACCGGGTA GTGCTGGGAA TGCTAGCGGT CTTATCACCA ATAAAAGCCT GATCAATACC ACCATTTTGG CAGACGATCA GCAGACCATT GCCTTAGGTG GCTTGATGCG CGACAACTCC ACTACGCGCC AACAAAAAGT GCCAGGTTTG GGTAATGTAC CCCTTATCGG TCGACTGTTC CGTTCGGACA ATGACAATAG CCAAAAAAGC AATTTAATCA TATTTTTACA GCCGACTATC CTCCGTGATG GCGGTGCAGT AGCAAGCGTG ACAGAGCGTA AATACAATCA GATGCGCGTT CTTCAGCTGG TTATCGATAA AAACGGTACG ATTAAACAGC TGCCATTAAG CGGTACCGAA GGTTGGAATG GTGATATTAT TGCTGATTAT GAGCTTATGC CACTCAATCC TTTGATTCCT AAACGGGATC AAAAGCCAAA AACAACTTCC AAAGGTTTTA CTCGTGTTGA TAGTCCAAGC ACAGGTATCA CAACTTATCC CTTAAATCGT TAA
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Protein sequence | MVSSHNFSVT PLHHILQRLM RLCRPLCLAI PLWAASTGLV SAESWKVNLQ DADIKAFINE VATITNQNFV LDPRINGNVT VISNKPLSRD EIYQLFLSVM QVNGIAAIDS GTTIKLVPDN VAKQTGVAVD LRGESVGETL ATRVIYLTNT QAAEVLGVIR PLMPPSAHAA AVPGVNALVL SDRADSLNQL TALIRDLDSN VNDSLQVIPL RHVDAERMME LISALVASAG SGQATGNNQL KVIADTASDR LLVKGSPEMI AKVQEMVNQL DTTPSRRLSG LRVFRLKYAS AGHIAEMLRG LLASQSINSS GGSSTLESAS LNDAAATGSS LTGGANSKVG SNSIGGTAAT PLPNNSSAGT SIGIGGRPFS IIADETQNAV IVNAAPELMF EIEDAVNQLD SRRSQVLIQA AIVEVSGDDA TQLGVQWALG NANSGYGVVN FNNVGASAVS LAAAALSGGT GISAAAGSIA GALLGIGSSS KDSKGNAQFY GAILQALDSS TSANLLSMPS ILTLDNEKAS ILVGQNVPFV TGSYTTGSDS STNPFQTIDR QDIGINLNVI PHIGANGTVR LEVSQEVSSV VPGSAGNASG LITNKSLINT TILADDQQTI ALGGLMRDNS TTRQQKVPGL GNVPLIGRLF RSDNDNSQKS NLIIFLQPTI LRDGGAVASV TERKYNQMRV LQLVIDKNGT IKQLPLSGTE GWNGDIIADY ELMPLNPLIP KRDQKPKTTS KGFTRVDSPS TGITTYPLNR
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