| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_1108 |
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| Symbol | secD |
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| ID | 4033690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter cryohalolentis K5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007969 |
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| Strand | - |
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| Start bp | 1333011 |
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| End bp | 1334888 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637973573 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_580373 |
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| Protein GI | 93005936 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0562212 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.23819 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATATC CCGCTTGGAA ATACCTACTC ATCACCGTCG TACTTATCAT TGCCGGTCTA
TACGCTGCTC CTAACTTATA TCCTGACGAA CCTGCCGTAC AGATTACCAG TGCTGCAGCA
GGCACACAGT TGTCTGATGG CATTTTAACG CAGTCACAAG ACTTGTTAAA AGAAGCTGGC
TTGAACTACC ATGATGGTAC GTTCAAAGGT AACAGTGCAT TGGTACGTCT TGACAATCCA
GTCGATCAGC TCAAAGCTCA GGAAGTATTG AGAAAAAACT TGGGTGAGAA CTATGTAGTC
GCACTGAACT TAGCGCAGAC AACGCCGCAG TGGTTGCGTG ATATCGGCGC AAAGCCCATG
AAACTTGGTC TTGATTTGCG TGGCGGCGTT CGTTTCGTCT TAGAAGTTGA TATGGACAAG
GCGCTCGAAC AACGTCTGAC CAGTGCCAGT CGCGATATTC GACGAGATCT AAGAGCTGAG
CGCATTGCTG TCAAAGGTAT CAAAAACGAC AAGCGTAGCG TGGTATTGCA TTTTTCCGAT
ACAGACACTC GTAACCGTGC CCAAAACGTT TTGCAAAGCT CAATGGGTAA TACCTTTGCC
CTGCAATCTT CTATTGATGA GCAAGGCCCT GCCCTGATTT TGGCGTATAA CGATGCAACG
CTTGATGAAA TCAACAGCTA TGCGGTCAAT CAAAACTTGA CTACCCTACG CAATCGTATT
GCTGAACTTG GGGTAACAGA AGCCTTGGTA CAATCACAAG GTGCTAGCCG TATCGTCGTT
GAGCTACCAG GTGTACAAGA TACCGCTGAG GCAAAACGCG TCCTTGGTCG TACGGCCAAT
CTTGAATTCC GTATGGTCGC TGAAGGTGCC GAAAACTATA CAGGCGGTAT TCCACCTGCC
GGTACTGAAG CGTTCCCATT TGAAACCCTT GATGGTCCGC CAGTATTATT AGAGCGCCAA
GCGATTGTCA CTGGTGATAA AGTTACCAAT GCTCAAACCG GTATTGATGA AAGTGGCTCA
CCTGAGGTTA GTATCACCTT AGACAGTGCT GGTGGTAAGC TGATGCAGAA TGCTACCCGT
ACAGCGGTTG GCAAACAAAT GGCAGTATTG TTTATTGAAA ATAAACAGCG CATCGCTTAT
GAAGAAGACC CAGTTACTGG CGAAACGACT GAAGTTCGGA CGCCATATGC TGAAACAAAA
GTCATTAACC GTGCCAATAT CCAAGCAGTA CTAGGCTCAT CTTTCCGTAT CACTGGTCTG
GATAGTAGTG CTGAAGCCGC TGAGCTTGCA TTGTTACTAC GCTCAGGCGC GTTAGCGGCA
CCGATGTATT TTGTTGAAGA GCGCACCATT GGTCCATCAC TGGGTCAGGA AAATATCGAT
AAAGGCTTAT TCTCTACGCA GGTTGGTTAC TTACTAGTCT TTGCATTTAT GATTATCTTC
TATCGTCTGT TTGGTGTGAT TGCCAATATT GCTCTAGCAT TCAACGTTAT TATTATTATC
TCTATTATGT CCATCTTAGG CTCATCACTG ACGCTACCGG GTATCGCTGG TATTGTATTG
ACCATTGGTA TGGCGGTCGA TGCCAACGTG CTGATTTTTG AGCGTATTCG CGAGGAAATA
GCTAATGGAG TCAGACCGAA ATCGGCTATC GTGGCAGGTT TTGATCGTGC TTATAGTAGT
ATTTTCGATG CCAATATCAC AACCTTACTG GTCGCCTTTA TCTTATTTGC GATTGGTACA
GGTCCGATTA AAGGCTTTGC GATTACTTTA GCCATTGGTA TTGTCAGCTC GCTGTTTACG
GCAATTTTAG TAACCCGTGC ACTGATACAA ATTGCTTATG GTAAGCGTAA ATCTATCAAA
CGTCTGAGCA TCGGTTAG
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| Protein sequence | MQYPAWKYLL ITVVLIIAGL YAAPNLYPDE PAVQITSAAA GTQLSDGILT QSQDLLKEAG
LNYHDGTFKG NSALVRLDNP VDQLKAQEVL RKNLGENYVV ALNLAQTTPQ WLRDIGAKPM
KLGLDLRGGV RFVLEVDMDK ALEQRLTSAS RDIRRDLRAE RIAVKGIKND KRSVVLHFSD
TDTRNRAQNV LQSSMGNTFA LQSSIDEQGP ALILAYNDAT LDEINSYAVN QNLTTLRNRI
AELGVTEALV QSQGASRIVV ELPGVQDTAE AKRVLGRTAN LEFRMVAEGA ENYTGGIPPA
GTEAFPFETL DGPPVLLERQ AIVTGDKVTN AQTGIDESGS PEVSITLDSA GGKLMQNATR
TAVGKQMAVL FIENKQRIAY EEDPVTGETT EVRTPYAETK VINRANIQAV LGSSFRITGL
DSSAEAAELA LLLRSGALAA PMYFVEERTI GPSLGQENID KGLFSTQVGY LLVFAFMIIF
YRLFGVIANI ALAFNVIIII SIMSILGSSL TLPGIAGIVL TIGMAVDANV LIFERIREEI
ANGVRPKSAI VAGFDRAYSS IFDANITTLL VAFILFAIGT GPIKGFAITL AIGIVSSLFT
AILVTRALIQ IAYGKRKSIK RLSIG
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