| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcryo_0219 |
|---|
| Symbol | |
|---|
| ID | 4035699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter cryohalolentis K5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007969 |
|---|
| Strand | + |
|---|
| Start bp | 262434 |
|---|
| End bp | 263765 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637972665 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_579487 |
|---|
| Protein GI | 93005050 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000590665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGT CAGTCACGAC CCAAACTGAG CAAGGCCTGT ACATCAATCC TGAAGCCTTA
ACCGCCCATT TGCCTGAACT ACATTATCAA AATAATACGC TACATATGGA GCAAGTCAGT
ATTACCGAAG TGGTTAAACA CTATGGTACG CCTTGTTATG TGTACTCAAA GCAAGCCATT
TTGGATGTCT ATCAAGCTTA TACCGATAGC TTTGCCAGCT TAACTCACCA GATTTGCTAT
GCGGTAAAAG CAAACTCAAA CCTTGCGGTA CTTGGCGTAT TGGCGCAAGC AGGCGCAGGG
TTTGATATCG TTTCACGTGG CGAGCTGATG CGGGTATTGG CGGCAGGGGG CGAAGCTACA
CGTGTGGTAT TCTCAGGCGT CGGCAAAACC TATAGCGATA TTGAATATGC GCTTAACCAA
GGTATTGGTT GCTTTAATGT TGAGTCGATT AGCGAGCTGA CTCTAATCAA TGAAGTAGCC
GCGCAGCTTG ATAAATCAGC GCCGATATCA CTACGTGTCA ATCCTGATGT AGATGCCAAA
ACCCATCCGT ATATTTCAAC AGGTCTCAAA GACAATAAAT TCGGTATTGC TCACGAGGAT
GCGCTGGTCG TTTATCAACA AGCCGCCAAA TTGTCTCATA TCGATATCGT TGGTATTGAC
TGTCATATCG GCTCGCAGTT GACTGAAGTT GCGCCATTCG TTGCGGCATT GGACAAAGTG
ATTGAGCTGG TGCATAGCTT ACGTAAAGCA GGTATTGAGC TGCGTCATAT CGATTTGGGT
GGTGGTCTGG GTGTGCGTTA TATTGATGAG ACGCCTGTGT CTATTGATGA ATTTGCCAAT
GCGTTATTAC CAAAACTTAG TGAGCTTGGC TTGACGGTAT TCTTTGAGCC GGGTCGTAGT
ATCGTGGCAA ATGCTGGGGT ATTATTGACC AAGGTTGACG TGCTCAAACC AACTGAGCAT
AAGAATTTTG CCATTGTTGA CGCGGCAATG AACGACTTAA TTCGCCCTGC TTTATATCAA
GCAGAAATGG CAGTAATTCC AAACGTTTTG CCTAGTAATG GTATTAATAC AGAAAGTACT
GAGCCATGGG ATATCGTCGG CGCTATCTGT GAAACGGGTG ATTTCTTAGC AAAAGATCGT
TTGTTGTCGC TCTCAACAGG CGATATCTTG GCGATCACGG GTGCTGGTGC TTATGGCTTT
ACTATGAGTA GCAACTATAA TTCACGCCCG CGAGCTAGTG AAGTCATGGT AGCTGATGAT
CGCCACCAGC TGATTCGCAA ACGCGAAACC GTTGAAGCGC TATATGCAGA CGAAGTATTG
TGGCAAGGTT AA
|
|---|
| Protein sequence | MSQSVTTQTE QGLYINPEAL TAHLPELHYQ NNTLHMEQVS ITEVVKHYGT PCYVYSKQAI
LDVYQAYTDS FASLTHQICY AVKANSNLAV LGVLAQAGAG FDIVSRGELM RVLAAGGEAT
RVVFSGVGKT YSDIEYALNQ GIGCFNVESI SELTLINEVA AQLDKSAPIS LRVNPDVDAK
THPYISTGLK DNKFGIAHED ALVVYQQAAK LSHIDIVGID CHIGSQLTEV APFVAALDKV
IELVHSLRKA GIELRHIDLG GGLGVRYIDE TPVSIDEFAN ALLPKLSELG LTVFFEPGRS
IVANAGVLLT KVDVLKPTEH KNFAIVDAAM NDLIRPALYQ AEMAVIPNVL PSNGINTEST
EPWDIVGAIC ETGDFLAKDR LLSLSTGDIL AITGAGAYGF TMSSNYNSRP RASEVMVADD
RHQLIRKRET VEALYADEVL WQG
|
|---|
| |