| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_3124 |
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| Symbol | rpoE |
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| ID | 3725832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 3642902 |
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| End bp | 3643546 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637752736 |
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| Product | RNA polymerase, sigma-E factor |
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| Protein accession | YP_358529 |
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| Protein GI | 77920714 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.00674158 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATTACC GGAATACGGC AGCCGTTATA GAGGTGGATG AGGTGCCGGA ACAGCTTAGC
GAACCGATGA CGGACAGCGA ATCCCTGTTG CTGGAAAGAA TTCGCCAGGG AGACGAGGGT
GCCTTTACAC AGCTGGTTTC AGGCCATCTG TCCTCGGTGG TCAATCTTGC TTACCGTATG
CTGGGGGATC GCCAGGAAGC TGAAGATCTG GCCCAGGAGG CGTTTTTGCG TCTGCACCGT
TCCCTGCCCT CTTTTCGCGG GGATTGCCGG ATCAAGACCT GGCTTTACAA GGTTGTCTCC
AGGCTGGTGA TCGACCATAT CCGGCGGGAA CAGGTACGGC GCCGCATCTT TTTTTTCCGC
AAACATGAGG ACGATCCCGA TCCGGTGGCC AATTTTGCCG ATCCTTCGGC ATCGCCCAGT
GACCAGCTTC TGGGACAGGA AACTCGGCAA AAGTTGTTCA AGGCCATGGA GAAACTCTCC
GGACGGCAGC GCGCCGTGTT CGTCTTGCGC CATCAGGAAG GTCTGCCCCT CAAGGAGATC
GCCCAGGTGC TGCATTTGAA GGAGGGTACG GTCAAGGCTC ATCTGCATCG CGCCGTGCAA
TGTATACGTC AAGAATTTAC CGATCAGGAA GAGGTAACGT CATGA
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| Protein sequence | MDYRNTAAVI EVDEVPEQLS EPMTDSESLL LERIRQGDEG AFTQLVSGHL SSVVNLAYRM
LGDRQEAEDL AQEAFLRLHR SLPSFRGDCR IKTWLYKVVS RLVIDHIRRE QVRRRIFFFR
KHEDDPDPVA NFADPSASPS DQLLGQETRQ KLFKAMEKLS GRQRAVFVLR HQEGLPLKEI
AQVLHLKEGT VKAHLHRAVQ CIRQEFTDQE EVTS
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