| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2879 |
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| Symbol | nirB |
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| ID | 3725585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 3365173 |
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| End bp | 3368088 |
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| Gene Length | 2916 bp |
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| Protein Length | 971 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637752489 |
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| Product | nitrite reductase (NAD(P)H)subunit |
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| Protein accession | YP_358284 |
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| Protein GI | 77920469 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1251] NAD(P)H-nitrite reductase
[COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
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| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit
[TIGR02378] nitrite reductase [NAD(P)H], small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTAAAA AAATCGTAAT TATCGGTAAC GGCATGGTGG GACACCGTTT CTGTGTGGAA
CTGATTGAGC GGGGCCTAGC GGGAAAAAAC AGGGTGATTG TGTTCGGCGG TGAACCGCGA
CCGGCTTACG ACAGGGTGCA GCTTTCAACC TGGTTCGCCG AAGAGTCGGT GGACCTGACC
CTGGAAGACG AGGCATGGTA CCGCGACAAC GGCATAGAGT TGAGTCTCGG CGACCCGGTA
ATCGCCATCG ACCGGGAGAA TCGCACTGTC TCTACCACCT CGGGACGCTG TCAGGAGTAC
GATAAGCTGG TGCTCGCCAC CGGCTCGTCG GCCTTCATGC CGCCGATTCC GGGAATGGAA
CACACCGGTG TTTTCGCTTA CCGCACCATC GATGATCTGG AGGCGATCGC CGCCTACAGC
CGGAAAGTAT CCAGCGTCGC CGTGATCGGA GGCGGCCTGC TCGGCCTGGA AGCGGCTAAG
GCCTGCGTCG ATCTGGGGCT GGAAACCAAG GTGGTGGAGA TGGCCCCGCG GCTGATGCCC
CGGCAGCTCG ACGACAAAGG CGCCGCGGTG CTCACCGAGG CGATCGAGCG TCTTGGCATC
GAGGTGCTCA CCGGTGTGGC CACCACCGGC ATCGAGGGGG AAGACACGGT CACCGGCCTC
GGATGCCGTG ACCGCGACGT CCTGCCGGTG GAAATGGTGG TGGTGTCCGC CGGCATCGTA
CCCAACGACA AACTGGCCCG CGATTGCGGT CTGGAGATCG GACAGCGCGC CGGCATCGTG
GTTAACAGTG CCATGCAGAC CAGCGACCCG GCGATCTACG CCATCGGCGA ATGTGCCCTG
TTCGAAGGAA TGATCTACGG CCTGGTGGCC CCCGGCTACG AAATGGCGCG GGTCACCGCG
GCACAATTCG ACGGGGAGGT AAAGGAATTC ACCGGCTTCG ACATGTCCAC CAAGCTCAAA
CTGCTGGGGC TCGACGTGGC CTCCCTAGGT AATCCCTTCG ACGACAACCC GGACAACCGG
GTGGTGGAGG TGCATGATAC CGTTACCGGA ATCTACAAGC GCATGGTCAT CGATCCCAGC
GGCAAGAAGT TGCTCGGCGC CATCCTGGTG GGCGACGCCG AGCCCTACGG CATGCTGTCC
CTCTACGTCA AGGGCAACAA GGATCTTCCC GAGCAGCCCC AGTCGCTGAT TGTCAAAGGC
GGCGCCGGCG CCGGTCTGAC CATCGACCAG TTGGAGGATG AAGATATCAT CTGCTCCTGC
AACAACGTCA GCTATGGTAC CATCAGCCAC GCCATCGAGG AGCAGGAGCT GCGCACCGTG
GATGCGATCC AGAAAGTCAC CAAAGCCGGC ACCGGCTGCG GCGGTTGCCT GCCGATGGTC
AAGGCGGTGC TCAAACACGA GTTGGCCAAG GCCGGCATCG AAATGGACAA TTCGGTGTGC
GGGCACTTCC GCTATTCGCG CCAGGATCTG CTGCACATCG TCAAAACCAA AAAGATCCGC
ACCTTCGAGG AGCTGCTGGA ACAGTACGGT CAGGGAGCCG GCTGCGCGGT GTGCAAAACT
CAGGTCGCCT CGATCTTCGC ATCGCTGTGG AACGAGTACA TCCTCGATCA CGCCAATCTG
CAGGACACCA ACGACCGTTT TCTCGGCAAC ATCCAACGCA ACGGTACCTA CTCTGTCATT
CCGCGTTCCC CTGGCGGCGA GATTACCCCT GAGCAACTGA TCGTTATGGG CGAGATAGCC
AAAGAATTCA ACCTTTACAC AAAACTCACC GGCAGCCAAC GCGTGGCGCT GTTCGGCGTA
CACCTGGAGG ATCTGCCTAA AGTCTGGGCG CGACTGGGCG AAGTGGGTTT GGAGTCCGGA
CACGCCTACG CCAAGGGGCT GCGCATGGTC AAGAGCTGTG TAGGAGATAC GTGGTGCCGC
ATGGGCATGG GGCCTTCCGT TGATTTTGCC ATCGAACTGG AAAACCGATA CAAAGGCATG
CGCTCGCCGC ATAAGTTAAA AGCGGCGGTG TCCGGCTGCA CACGCGAGTG CGCCGAAGCG
ATGTGTAAAG ACTTCGGCCT GATCGCCACC GAAAACGGTT GGAACCTTTA CGTCGGCGGC
AACGGCGGCG CCTTCCCGCG TCACGCCGAC CTGTTGGCCA CCGATCTCGA CCGGGAAAAG
GCCATCCGCT ATATCGACCG CTACCTGATG TATTACGTAC GCACCGCCGA CAAGCTGGAG
CGTACCGCCA CTTGGCTGGG CAATCTTGAG GGCGGGGTAG AGAAACTGAA GAAGGTTATC
ATCGAAGACT CCCTTGGTAT TTGTGCCGAA CTCGAGGCGG ACATGGAGCG GATCGTCGCC
GGCCAACATG ACGAATGGGC TGTTACCCTC TCCAAGCCGG AGCAGTTGGA ACGATTCCGC
CACTTTGCAA ACACCGACGG GAAGGATCCT GTCAAGCTAA TCGGCGTGCG CGGCCAGGAG
AGGCCGGAAA ATTGGCTGAA GGAATACGCT ATGCCAGAGA TCGAGCCAGT GGTCCTGGAA
GGACCCCGCG AATGGGTCAA TCTTGGCTGT GTCTCTGCGA TACCCAAAAA TAGTGGTGCT
ACCTTTCAAT ATGGCCGACA CCAGATTGCG GTATTTAATT TCTCACACCG AGGTGAATGG
TATGCCTGCC AGAATCTCTG CCCCCACAAG CAGGAGATGG TCCTGTCCCG CGGCCTTCTC
GGAGATGCTG CGGGCATTCC GCAGGTGACC TGCCCGATGC ACAAGAAATC TTTCTCACTC
AAGGACGGCA AGTGCGCCAA CGACGAAATC TATACCATTC AAACCTTTGA AGTGAAGGTC
GATGGTGATG ACCTCTTGGT CAAACTCCCC ACACAGGAAG ATCTAGATCG TTTGCACATT
TGCAAGAGCA ACGAACCTTG CACCTGCTTC GCTTGA
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| Protein sequence | MTKKIVIIGN GMVGHRFCVE LIERGLAGKN RVIVFGGEPR PAYDRVQLST WFAEESVDLT
LEDEAWYRDN GIELSLGDPV IAIDRENRTV STTSGRCQEY DKLVLATGSS AFMPPIPGME
HTGVFAYRTI DDLEAIAAYS RKVSSVAVIG GGLLGLEAAK ACVDLGLETK VVEMAPRLMP
RQLDDKGAAV LTEAIERLGI EVLTGVATTG IEGEDTVTGL GCRDRDVLPV EMVVVSAGIV
PNDKLARDCG LEIGQRAGIV VNSAMQTSDP AIYAIGECAL FEGMIYGLVA PGYEMARVTA
AQFDGEVKEF TGFDMSTKLK LLGLDVASLG NPFDDNPDNR VVEVHDTVTG IYKRMVIDPS
GKKLLGAILV GDAEPYGMLS LYVKGNKDLP EQPQSLIVKG GAGAGLTIDQ LEDEDIICSC
NNVSYGTISH AIEEQELRTV DAIQKVTKAG TGCGGCLPMV KAVLKHELAK AGIEMDNSVC
GHFRYSRQDL LHIVKTKKIR TFEELLEQYG QGAGCAVCKT QVASIFASLW NEYILDHANL
QDTNDRFLGN IQRNGTYSVI PRSPGGEITP EQLIVMGEIA KEFNLYTKLT GSQRVALFGV
HLEDLPKVWA RLGEVGLESG HAYAKGLRMV KSCVGDTWCR MGMGPSVDFA IELENRYKGM
RSPHKLKAAV SGCTRECAEA MCKDFGLIAT ENGWNLYVGG NGGAFPRHAD LLATDLDREK
AIRYIDRYLM YYVRTADKLE RTATWLGNLE GGVEKLKKVI IEDSLGICAE LEADMERIVA
GQHDEWAVTL SKPEQLERFR HFANTDGKDP VKLIGVRGQE RPENWLKEYA MPEIEPVVLE
GPREWVNLGC VSAIPKNSGA TFQYGRHQIA VFNFSHRGEW YACQNLCPHK QEMVLSRGLL
GDAAGIPQVT CPMHKKSFSL KDGKCANDEI YTIQTFEVKV DGDDLLVKLP TQEDLDRLHI
CKSNEPCTCF A
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