Gene Pcar_2692 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_2692 
SymbolprfA 
ID3725397 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand- 
Start bp3144351 
End bp3145421 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content58% 
IMG OID637752302 
Productpeptide chain release factor 1 
Protein accessionYP_358098 
Protein GI77920283 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.000179951 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATATTTA ACAAGCTCGA AGAAGTGGAA GATCGGTTTC GTGAAGTCGA GGGGCTGCTG 
TCGGACCCGC AGGTCGTGTC GCAGCAGAAA CGTTTTCTCG AGTTGACGCG CGAACATGCC 
GAACTGTCGT CGGTAGTCGC GGTTTATCGC GAATACAAAC GGGTAAGCGA AGATATCGAG 
GGGAACCGCG AGTTGCTGCA GGATAGCGAC CCTGAAATGC GGGAGATGGC CAAGGCGGAG 
CTGCCCGAAC TCGAGGCTCA TCGTGAAGAA CTGGCTCAGC AGCTTAAGGT TCTGCTGTTG 
CCTAAAGATC CCAACGACGA CAAGAACGTT ATCCTTGAAA TCAGGGCAGG TACCGGTGGC 
GACGAAGCGG CACTGTTTGC CGGCGACCTG TTCCGCATGT ACAGCCGTTT TGCCGAGGGG 
CAGGGTTGGA AAGTCGAGAC CATGAGCGTT TCGGACTCCG AAGCCGGCGG ATTCAAGGAA 
ATTATCGCCA TGATCAGCGG CAACCGGGTG TATTCGCAAC TCAAATACGA GAGCGGCACC 
CATCGGGTGC AACGGGTGCC GGAGACGGAG GCCCAGGGGC GTATCCACAC CTCGGCCTGC 
ACGGTGGCGG TGTTGCCCGA GGCTGAAGAC GTTGATGTGG ATATCGATCC GACCGATCTG 
CGCATTGATG TTTACCGCGC CTCCGGCGCC GGAGGGCAGC ACGTCAATAA AACCGAATCG 
GCGGTGCGTA TTACGCATGT GCCCACCGGA GTGGTGGTTT CCTGCCAGGA CGAAAAATCC 
CAGCATAAAA ACAAGGCCAA AGCCATGAAG GTGCTGAAGT CCCGCATCCT GGATCAGGTG 
ATGGCCGATC AGCAGGCGCA GATGGCCGCC GATCGCAAAA GCCAGGTCGG TAGCGGCGAT 
CGCAGTCAGC GTATCCGTAC CTACAACTTC CCCCAGGGGC GTTGCACCGA TCACCGCATC 
GGTTTGACGC TCTATCGGCT GGAAGGCATC ATGCAGGGCA ATCTCTCCGA GTTGGTCGAA 
CCCCTCACCC TGCATTATCA GAGTGAGGCC ATGGCGGCCC AGGAGGCGTA A
 
Protein sequence
MIFNKLEEVE DRFREVEGLL SDPQVVSQQK RFLELTREHA ELSSVVAVYR EYKRVSEDIE 
GNRELLQDSD PEMREMAKAE LPELEAHREE LAQQLKVLLL PKDPNDDKNV ILEIRAGTGG 
DEAALFAGDL FRMYSRFAEG QGWKVETMSV SDSEAGGFKE IIAMISGNRV YSQLKYESGT 
HRVQRVPETE AQGRIHTSAC TVAVLPEAED VDVDIDPTDL RIDVYRASGA GGQHVNKTES 
AVRITHVPTG VVVSCQDEKS QHKNKAKAMK VLKSRILDQV MADQQAQMAA DRKSQVGSGD 
RSQRIRTYNF PQGRCTDHRI GLTLYRLEGI MQGNLSELVE PLTLHYQSEA MAAQEA