| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2235 |
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| Symbol | thiD |
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| ID | 3724908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 2608032 |
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| End bp | 2609471 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637751836 |
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| Product | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase |
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| Protein accession | YP_357644 |
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| Protein GI | 77919829 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
[COG0352] Thiamine monophosphate synthase |
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| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase
[TIGR00693] thiamine-phosphate pyrophosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 87 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAACA GACATTTTCG GGGTCTTTAC CTGATTACCG ATGATTCGCG GGGCGACCAG
CTGCAAGCCA AACTTGTCGC CGCTCTCAAA GGCGGAACGC GCATTGTACA GTACCGAGGC
AAACATCTCC CGGAGGATGT GCGACACCGT GAGGCACGCA TGGTCCATAG CCTGTGCAAA
CAGGCCGGTG CCCTGTTCAT CGTCAACGAT GACCCGCATC TGGCCCTTGC CTGTCAGGCC
GACGGCGTGC ACCTGGGCCA GCAGGACATG CACATTGCCG AGGCCCGCGC CCTGCTTGGC
CCGGATAAAA TCATCGGCAC CTCCAACCGC ACCGTCGAAC AGGCTGTCAA CTCGCAAAAG
GCCGGTGCTG ACTACGTTGC CGCCGGCAGC GTTTACCCCA CCGGCAGCAA ACAGGATGCC
GTGCATATCG GACTCGATGT CTTGCATGAT ATCCGTCAGG CCGTGGACAT CCCTCTGGTG
GCCATCGGGG GCATCAACCG GGACAATACC TCGGAGGTCA TCCATGCCGG GGCCGATGCC
ATTGCCCTGA TTTCCGCGGT CATGGCCGAC CCCAGCCCGG CACTGGCTGC GCGGGAAATT
TCTCTACAAT TCAATCGCCG CGCCCCAGTA CCTCACGGCC GAGTGCTGAC CGTAGCCGGT
TCAGACAGCG GCGGCGGGGC CGGCATTCAG GCCGACCTCA AAACCATCAC GCTGCTGGGC
GGCTACGGCA TGAGCGTCAT CACTGCCCTG ACCGCACAAA ACACCTGTGG CGTGCAAAAC
ATCTACCCGG TCCCTGCCAG CTTTGTCGGC GAACAGTTGG CGGCAGTGCT TGGCGATCTC
CAACCGGAAG TGGTCAAGAC CGGCATGCTG CTCGATGCGG CCATCGTCCG GCTGGTTGCC
CAGGCCCTCA AAGACCACGG TCTGCTGGCA GTAGTCGATC CGGTCATGAT CGCCAAGGGC
GGCGCCTCGT TGCTGCGCGA CGAAGCCACC AAGGTTTGTC GAGAGCATCT GCTTCCGCAC
ACCTATCTGC TCACCCCCAA CCTGCCGGAA GCCGAACAAC TGACCGGCCT GCCCGTCCAC
ACCGAGGCCG ATATGGAAAA GGCGGCCCGG CGCCTGCAGC AACTCGGTGC GCGCCACGTG
TTACTCAAGG GCGGACACCT CGAGGGCGAA GCCGTCGATC TGCTACTGGA TGGCAATACC
CTGCATCGAC TGCCGGCGAA ACGTATCGAC AGTCGCAACA CCCACGGCAC CGGCTGCACC
AGCTCCGCAG CCATTGCCGC TTTGCTGGCC GGCGGCCACC CCCTGCCCCA GGCGGTAGCC
CTGGCCAAGG AATTCATTAC CGAAGCGATT CGCACCGCTC CCGACCTTGG AGCCGGCCAC
GGACCGGTCA ATCACTTCGC CGCGGCCAAA TACCTGATGA ACACAATCGA AGGACTGTAA
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| Protein sequence | MKNRHFRGLY LITDDSRGDQ LQAKLVAALK GGTRIVQYRG KHLPEDVRHR EARMVHSLCK
QAGALFIVND DPHLALACQA DGVHLGQQDM HIAEARALLG PDKIIGTSNR TVEQAVNSQK
AGADYVAAGS VYPTGSKQDA VHIGLDVLHD IRQAVDIPLV AIGGINRDNT SEVIHAGADA
IALISAVMAD PSPALAAREI SLQFNRRAPV PHGRVLTVAG SDSGGGAGIQ ADLKTITLLG
GYGMSVITAL TAQNTCGVQN IYPVPASFVG EQLAAVLGDL QPEVVKTGML LDAAIVRLVA
QALKDHGLLA VVDPVMIAKG GASLLRDEAT KVCREHLLPH TYLLTPNLPE AEQLTGLPVH
TEADMEKAAR RLQQLGARHV LLKGGHLEGE AVDLLLDGNT LHRLPAKRID SRNTHGTGCT
SSAAIAALLA GGHPLPQAVA LAKEFITEAI RTAPDLGAGH GPVNHFAAAK YLMNTIEGL
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