Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_2005 |
Symbol | ispE |
ID | 3724696 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | - |
Start bp | 2336577 |
End bp | 2337419 |
Gene Length | 843 bp |
Protein Length | 280 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637751607 |
Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
Protein accession | YP_357416 |
Protein GI | 77919601 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0000000000000192369 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAGCT TTCTGGCACC GGCAAAAATC AATATCTGTC TGCATGTGCT CGGGCGGCGT GAGGACGGTT ATCATGAACT GGCCATGCTC ATGCAAAGGG TCTCCCTGTA TGACAGGATA AGCCTCTCTT TTATCGAAGG CAACGACATC CGTGTGCAGT GCGACGGGCT GACGTTGCCA TTGGGCCAGA AAAATATAGC GGCTCGCGCA GCGCAAGCAC TTTTTGATCG TGCCGGCATC CGTCGAGGAC TGGATATAGT CATCGAAAAG AATATTCCCG TTGCCGCGGG CCTGGGCGGC GGATCGTCAG ACGCCGCGAC CGTGCTGATG GGCCTGAACG ATATGCTCGG ATTGGGTCTG TCCGCTACCC AGCTCATGCA GGAAGGTGTG AAGCTGGGAG CCGACGTTCC GTTTTTCATC TACAAACATC CCGCCTGGGC TACCGGTATC GGTGACAAAT TGCAGGAAGT CGAAGGCTTG CCTCCGGTCT GGTACGTGCT GGTCAATCCC GGGCTCGAGG TTTCTACCGC CTGGGTTTAT CAAAATTTGC GGTTGACATC GGCGAGGGAT AATCTTAGAA TACCTCGATT TTCCGGCACG GTAGACGAGG TCGTCGAGTT GCTTCACAAT GACCTTGAGA CCGTAACGGT CGAGCGTTTC CCGCTTATCG GCGAAATCAA GCAGCAGTTG CTTGGTCTCG GTGCGCGGGG TGCCCTGATG AGCGGTAGTG GTTCAACGGT ATTCGGGGTG TTCAGCGATG GCGATACGGC CAGGGCTGCG GCCGAGAACC TTTCGTCTCG GTCGGGGTGG CGCGCTTTTG CCGTGGAACC GGTTAACGAT TGA
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Protein sequence | MESFLAPAKI NICLHVLGRR EDGYHELAML MQRVSLYDRI SLSFIEGNDI RVQCDGLTLP LGQKNIAARA AQALFDRAGI RRGLDIVIEK NIPVAAGLGG GSSDAATVLM GLNDMLGLGL SATQLMQEGV KLGADVPFFI YKHPAWATGI GDKLQEVEGL PPVWYVLVNP GLEVSTAWVY QNLRLTSARD NLRIPRFSGT VDEVVELLHN DLETVTVERF PLIGEIKQQL LGLGARGALM SGSGSTVFGV FSDGDTARAA AENLSSRSGW RAFAVEPVND
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