Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_1944 |
Symbol | kdsA |
ID | 3724634 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | - |
Start bp | 2257347 |
End bp | 2258180 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637751545 |
Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
Protein accession | YP_357355 |
Protein GI | 77919540 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
TIGRFAM ID | [TIGR01361] phospho-2-dehydro-3-deoxyheptonate aldolase [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.00131131 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCAGACA CATTGAAGGT GGCCGACGTC ACTTTTGGTG GGAATCATCC GGTTGCACTG ATAGCCGGAC CCTGCGTTAT GGAAAACGAG GCCCATACCC TGGCGATTGC CAGGCAGTTG CTCGAGGTGA AAAACGAGCT TGGGGTCGGA GTTGTGTTCA AGGCCTCCTT TGATAAGGCC AACCGGACTT CCGTCAGCGC TTATCGCGGT CCGGGCCTGG AGTCGGGGCT GCGCATTCTG GACAAGGTAC GGCAGCAGAC AGGTTTGCCC ATTGTCTCGG ATATTCATGA TGTCAGTCAG GTCGAGGCGG CTGCGGAGGT GCTGGACATT CTCCAGATCC CCGCTTTTTT ATGTCGGCAG ACCGACTTGT TACTGGCCGC GGGCCGCAGC GGTAAGGTGG TCAATATCAA AAAGGGGCAG TTTCTGGCCC CCTGGGATAT GGCCAATGCC GTGGCCAAGG TGGCTTCGAC GGGCAACGAT CGCATCCTGC TGACCGAGCG AGGTACCTCC TTCGGCTACA ATAACCTGGT TGTGGATATG CGTTCTCTTG CCGTTATGCG AGAACTGGGG TGTCCGGTTG TCTTCGATGC CACCCATGCC GTGCAGCTGC CCGGCGGGGC CGGAACCTCC TCGGGGGGGC AGCGCCAATT TGTGGCTGCG CTTTCGCGTG CTGCGGTTGC CGTCGGCGTC GACGGCCTGT TCTGGGAAGT GCATCCGGAT CCGGATCGCG CCTTGTGCGA CGGCGCCAAC TCCCTGCCGC TCGACCAGGT GAAAAAAACC CTAAAAGAGA TGATGGCCAT TGATGCCATT GTTAAAGGAA ACACTGAATC GTGA
|
Protein sequence | MPDTLKVADV TFGGNHPVAL IAGPCVMENE AHTLAIARQL LEVKNELGVG VVFKASFDKA NRTSVSAYRG PGLESGLRIL DKVRQQTGLP IVSDIHDVSQ VEAAAEVLDI LQIPAFLCRQ TDLLLAAGRS GKVVNIKKGQ FLAPWDMANA VAKVASTGND RILLTERGTS FGYNNLVVDM RSLAVMRELG CPVVFDATHA VQLPGGAGTS SGGQRQFVAA LSRAAVAVGV DGLFWEVHPD PDRALCDGAN SLPLDQVKKT LKEMMAIDAI VKGNTES
|
| |