| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1892 |
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| Symbol | secD |
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| ID | 3724582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 2206791 |
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| End bp | 2208392 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637751493 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_357303 |
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| Protein GI | 77919488 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00000000000256259 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCAAGA GCATCAAGCT GCGGGGAGGG GTTGTACTGT TCTGCCTCGC TCTGTCATTG
TTGGCTTTAA TGCCGACTCT GTTTCCCAAC AGTTCCCCTG ATTGGCTGAA GAAGAGCTTC
GACCCTTTGC ATCTCGGACT CGATCTGCAG GGCGGCATGC ACCTGGTTCT CGGGGTTGAT
GTCGAAAAAG CGGTCGAAAG CCGGATCGAC GGCATCGTCG ACCAGGTGGA AACCGAGCTG
AAAGAAAAAG ACATCATTTT CAAGCGCGTC TCCCGGGTGG GTAACGATCG CTTGGTTGTC
GTTGTTTATG ACGACGAGGC CGGCAAGCAG GTCGATGCCT TTATGGCCGA CGGCGGCTAT
CGCGATCTGG AGCCTTTAAC ATTGGAAACT CAGGGCGGTT ATATCGAAAA ATATTTCCGC
TTTTCCTCTT CTGCCGTGGC GTCCATCCAG GATAATGCCG TGAAGCAGGC TCTCGAGACC
TTACGTAACC GCATCGACCA ATTCGGCGTC AGTGAAACCG TTCTGCAAAG GCAGGGCAGC
GACCGTATTC TGGTTCAGTT GCCCGGCATC AAGGATCCCC GGCGGGCCGT GGACCTGCTC
GGCAAAACCG CTTTGCTCGA ATTCAAGATG GTTGCGGAAA ACATCGATCT GCAGGCTGCG
GCCAAAGGGG TGTTGCCTCC CGGTACCCAG TTGCTTTACG AAAGACAGGT TGACCGGCGC
AGTGGCGCGG TCACCCAGAC GCCCTTGGTG GTCTACGACA AAACCGTGCT TACCGGCGAT
CTGGTCTCCG ATGCGCAGGT GCGGATAGAC CCCCGATTCA ACGAACCCTA CGTATCGATC
GACTTCAATG CTGTCGGTGC CAAGCGTTTC GACCAGATAA CCGCTTCCAA TGTCGGCAAG
CGCATGGCCA TCGTGCTTGA CGATACCGTT TATTCCGCGC CGTTTATCCG CGAACGGATC
TCCGGCGGCA GCGCGCAGAT CTCCGGTTCC TTCGACGAGC AGGAGGCCAC CGATCTGGCC
ATCGTACTGC GGGCCGGATC ATTGCCTGCG CCGGTTACCA TCCTTGAAAA TCGCACCGTC
GGTCCCTCCC TCGGTCTGGA TTCCATCCAT CGTGGTATCT GGTCGGTCAT TATCGGCTGC
GTGGCGGTGG TGCTGGCCAT GGGCATCTAT TACAACCTCG CCGGCCTGGT GGCCAACCTG
GCCCTGGTAC TCAACCTGGT GTTCATTATG GCCATGCTGA GTCTGTGCAA GGCCAGTCTC
ACGCTGCCAG GTATCGGCGG TATCGTGCTG ACTCTGGGGA TGGCGGTGGA TGCCAATGTG
CTCATTTATG AGCGTATCCG TGAGGAGTTG CGGCTCGGCA AGAGTGCCCG CAATGCCCTG
GAGGCCGGCT ACAGTAAAGC CTTTTTGACC ATTATGGATG CCAATATCAC GACCCTGATC
GCTGCTTTGG TGCTCTTTCA GTTCGGCACC GGTCCGGTCA AAGGCTTTGC CGTGACCCTG
TCCATCGGGA TTGCCGCGTC GCTGTTTACG GCGATATTCG TCTCACGTGT TATTTTCGAC
TTTTTCCTGG AACGCTACCA GGTCAAGCGA TTGAGTATCT AG
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| Protein sequence | MSKSIKLRGG VVLFCLALSL LALMPTLFPN SSPDWLKKSF DPLHLGLDLQ GGMHLVLGVD
VEKAVESRID GIVDQVETEL KEKDIIFKRV SRVGNDRLVV VVYDDEAGKQ VDAFMADGGY
RDLEPLTLET QGGYIEKYFR FSSSAVASIQ DNAVKQALET LRNRIDQFGV SETVLQRQGS
DRILVQLPGI KDPRRAVDLL GKTALLEFKM VAENIDLQAA AKGVLPPGTQ LLYERQVDRR
SGAVTQTPLV VYDKTVLTGD LVSDAQVRID PRFNEPYVSI DFNAVGAKRF DQITASNVGK
RMAIVLDDTV YSAPFIRERI SGGSAQISGS FDEQEATDLA IVLRAGSLPA PVTILENRTV
GPSLGLDSIH RGIWSVIIGC VAVVLAMGIY YNLAGLVANL ALVLNLVFIM AMLSLCKASL
TLPGIGGIVL TLGMAVDANV LIYERIREEL RLGKSARNAL EAGYSKAFLT IMDANITTLI
AALVLFQFGT GPVKGFAVTL SIGIAASLFT AIFVSRVIFD FFLERYQVKR LSI
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