Gene Pcar_1667 details

Gene Information

• Locus tag: Pcar_1667
• Symbol: dxs
• ID: 3724370
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: -
• Start bp: 1946830
• End bp: 1948734
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 637751265
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_357081
• Protein GI: 77919266
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.00000640226
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGTATGT TGAAAAATCT TAAATCTCCC GCGGAGTTAA AGGGTCTTTC CGTGAAAGAG 
CTTGAAGTTT TGGCTGGGGA GATTCGCACA AAAATCATCG ATACCGTGTC GCAGACAGGT 
GGGCATCTTG CCAGTTCCCT TGGTGTGGTG GAGTTGACCA TCGCGCTGCA TCACGTCTTG 
AATACCCCCG TAGATAAAAT CGTATGGGAT GTGGGACATC AGGCTTATGC CCATAAATTG 
CTGACCGGAC GCCTTGATCG TTTTGATACT TTGCGTCAAC TGGGCGGTAT CAGCGGTTTT 
CCCAAGCGCG AGGAAAGCCC TTACGATGCC TTCGATGTGG GCCACTCGAG CACCTCGATT 
TCGGCTGCTT TAGGTATGGC CGCTGCGCGT GATTGTAAAA ACGGCAAGGA AAAATTCGTT 
GCCGTCATTG GCGATGGCTC CCTTACGGGG GGGATGGCCT TCGAGGCGCT GAATCAGGCC 
GGCGATCAAA ATAAAAACCT CATTGTCATA CTTAACGACA ATGAAATGTC CATTTCGCAG 
AACGTCGGGG CGCTTTCTTC TCTTATCAAT CGCAAAATGA CCTCCGAGTT GGTGGTGCGA 
TTAAAAAAAG AGGCGGAAAA TTTCCTGGGG CACGTTCCCC GTATCGGGAA AGATTTGCTC 
AAGGTTGCGC GCAAGGCGGA AGAATCTCTG AAAGGATTCT TTACTCCCGG AATGCTGTTC 
GAAGCGTTCG GTTTCGATTA TGTCGGGCCG CTTAACGGTC ACCGCCTGGA GACCCTGATC 
CCGGCGCTGG AAAACGTGGC TAACCTCGAA GGACCGGTTC TTGTTCACGT TGTGACCCGC 
AAGGGTAAGG GGTTCGAGCC GGCGGAAAAA AATCCGAGCC TGTTCCATGG GGTAGGTCCC 
TTTGACAAGG AAACCGGAGA GGTACGTGCC TCCAAGGGCG GGCCGGCAAG CTTTACCGGT 
GTCTTTGGCA GTACTCTGAC TGCTATGGCT GAAAAAGACG ATCGCATTGT GGCTATCACC 
GCGGCGATGC TGGAAGGTAC CGGGCTCAAG GAATTCTCCA AGCGCTATCC CAGTCGATTC 
TTCGATGTCG GTATTGCCGA ACAACATGCT GTCACCTTTG CCGCCGGACT TGCCTGCCAG 
GGCATGAGGC CGGTGGTTGC TCTCTACTCG ACTTTTTTGC AGCGTGCCTA CGACAATGTG 
GTGCATGACG TAGCCTTGCA ACGGCTGCCG GTCACTTTTG CCATCGATCG GGGTGGCCTG 
GTCGGGGCCG ATGGCCCGAC CCATCATGGT GTGTTCGATT ATTCGTTCCT GAGGCATATA 
CCCAATATGG TAGTGATCGC CCCCCGCGAC GAGATCGAAC TGCAGCGTGC CATGTTGACC 
GGAACGCAAC ACGATGGCCC CTTGGCGTAT CGTTATCCTC GCGGTAAGGC TCTTGGGCTC 
GAGTTGCCCG ATTCCGTCGA GTCGATGCCT ATCGGTAAAG GGGAAAAACT GCGTGACGGC 
AGCGATGCGG TAATCTTTGC ATTGGGCGTT GTGTGCAAGG AAGCTCTGGT CGCCTCGGAT 
ATACTTGCCG GGGAGGGGTT GTCGGTAGCG GTTGTTGATC CGCGTTTCCT GAAACCCCTT 
GATCAGCAAC TTCTTATCGC TGAGGCACGG CGTACCGGCG TTGTTGTTAC CGTCGAGGAG 
AATGTGCGCC AAGGCGGTTT CGGTTCAGCG GTACTGGAAA TGCTGGCCGA TGAAGGTTTG 
GCGGTCCGTG TCCTGCGTAT CGGTTTGCCG GATCGCTTTA TCGAGCAGGG TACCCAGCAG 
CAGCTCTATG CGCGCTACGG TCTGGACGCC GAGGGTATTG CCGCCAGTGT CCGCAATTTT 
ATGCATCATG ATCGTGGGGA TGCTTCTTCG ACCGCCTTAG CTTGA 

 

Protein sequence

MSMLKNLKSP AELKGLSVKE LEVLAGEIRT KIIDTVSQTG GHLASSLGVV ELTIALHHVL 
NTPVDKIVWD VGHQAYAHKL LTGRLDRFDT LRQLGGISGF PKREESPYDA FDVGHSSTSI 
SAALGMAAAR DCKNGKEKFV AVIGDGSLTG GMAFEALNQA GDQNKNLIVI LNDNEMSISQ 
NVGALSSLIN RKMTSELVVR LKKEAENFLG HVPRIGKDLL KVARKAEESL KGFFTPGMLF 
EAFGFDYVGP LNGHRLETLI PALENVANLE GPVLVHVVTR KGKGFEPAEK NPSLFHGVGP 
FDKETGEVRA SKGGPASFTG VFGSTLTAMA EKDDRIVAIT AAMLEGTGLK EFSKRYPSRF 
FDVGIAEQHA VTFAAGLACQ GMRPVVALYS TFLQRAYDNV VHDVALQRLP VTFAIDRGGL 
VGADGPTHHG VFDYSFLRHI PNMVVIAPRD EIELQRAMLT GTQHDGPLAY RYPRGKALGL 
ELPDSVESMP IGKGEKLRDG SDAVIFALGV VCKEALVASD ILAGEGLSVA VVDPRFLKPL 
DQQLLIAEAR RTGVVVTVEE NVRQGGFGSA VLEMLADEGL AVRVLRIGLP DRFIEQGTQQ 
QLYARYGLDA EGIAASVRNF MHHDRGDASS TALA