| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1403 |
|---|
| Symbol | rnc |
|---|
| ID | 3723041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | + |
|---|
| Start bp | 1648653 |
|---|
| End bp | 1649351 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637750994 |
|---|
| Product | RNase III |
|---|
| Protein accession | YP_356819 |
|---|
| Protein GI | 77919004 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0571] dsRNA-specific ribonuclease |
|---|
| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.0000749592 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTCGAAG CTAAAAGTGC CGCGTTGTTG GAAGATACCA TTGATTATGT GTTTGATAAC
CAGGCTCTTT TGCTGGAAGC TTTGACACAT AAATCTTTCA GCAACGAACA GAACGACCGG
ACCGAGCCTG ACAACGAAAG ACTCGAATTC CTCGGTGACG CGGTGTTGGG GGTGGTTGTC
AGCCACTACA TTTTCCGTAC TTTTCCCCAC CTGCCCGAAG GAGAATTAAC CCGTATTCGC
TCAGAAGTCG TCAGCGAAAA AGGTCTGACG GTTATCGGTA AAGCGATCTG TCTGGGTGAT
TATATGCGTC TCGGCAAAGG GGAAGAGCGC AGCGGCGGTC GGCAAAAAAG CAGCTTGCTG
GCCAATACCA TGGAAGCATT GCTTGGTGCT GTTTTTTGTG ACGGCGGTTT TGACAGTGTT
CGGCGGGTCA TCGAGGCCTT GTTCATTCCC CATATTCAGC GTGCCGCACG TCGCAAGACA
GGTGTGGATT ACAAAACCCG CTTGCAGGAA CGCCTGCAGG CAAGGTTCGG AGATGTCCCC
CAGTACGTTC TGATTCATGC GGACGGGCCG CCCCATCAGC GTTCCTACTC GGTCGAGGCG
CATTTCCGGG GTTCCTGTAT CGGCCAGGGG CAGGGGCGCA GTAAAAAGTC CGCTGAACAG
GCAGCAGCCA AACAGGCGTT GGAGTATCTG GAAGAGTGA
|
|---|
| Protein sequence | MLEAKSAALL EDTIDYVFDN QALLLEALTH KSFSNEQNDR TEPDNERLEF LGDAVLGVVV
SHYIFRTFPH LPEGELTRIR SEVVSEKGLT VIGKAICLGD YMRLGKGEER SGGRQKSSLL
ANTMEALLGA VFCDGGFDSV RRVIEALFIP HIQRAARRKT GVDYKTRLQE RLQARFGDVP
QYVLIHADGP PHQRSYSVEA HFRGSCIGQG QGRSKKSAEQ AAAKQALEYL EE
|
|---|
| |