| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1077 |
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| Symbol | |
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| ID | 3723901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 1266071 |
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| End bp | 1268497 |
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| Gene Length | 2427 bp |
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| Protein Length | 808 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637750668 |
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| Product | sensory box/GGDEF family protein |
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| Protein accession | YP_356497 |
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| Protein GI | 77918682 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATTC GTACCAAGAT TATCGGTATG GGGTTGATGC TGGTATTGAT TACGGCATTC
ACCATCGTCG GGATATCTAT CGATCAGGTC CATGTCCTCG ATACCGCTAT CGATGAGGAA
ATGGAGAGCT TTATTCATAA TGAAACGCGC AAGGTGGCGG AGAGCGTCTA TCTCATGTGC
CGGTCCGTCC AGCAGCTTCA GGACGAGTCC TTAAAACGCA ATCTCGATGT TGCCACCAAG
CTGCTTGATA AGCAGGGCGG GCTGTCTTTC AGTCCTGAAC GGGTTCGGTG GAGTGCCGAA
AATCAGTTCG ATAAAAGCGT CAAAGCCATA GAACTGCCCA AGGTGCTGGT CGGCGCCCGC
TGGCTTGGTC AGAATGCCGA CATCACCCGC GAATCTCCGA TTGTCGATCA GGTGCAGAAA
ACGTTGGGGG TGACTTGCAC GCTGTTTCAG CGGATGAACG AGTCCGGCGA TATGCTGCGC
GTGGCCACCA ATGTTCTTAA CGATGACGGC ACACGGGCTA TCGGCACCTA TATCCCCCAA
CGTAATCCGG ACGGCAGTCT GAATCCGGTT ATCGGCGCGC TGATGAGCGG GAAGCCTTAT
GTGGGCAGTT CCTTTGTCGT GAACGATTGG TATGTTACCC GTTACGAACC GATCATGGAC
AACACGGGCA AACACCTTGT CGGTGCCCTG TATGTCGGGT ATCGGCAAGA GAGTCTGGAG
AGCCTGCGAA GCGGGATTCT CGATCTCGTG GTCGGAAAAA CCGGTTATGT GTATATTCTC
GGCAGCAAAG GCAGTCAGCG GGGTAAAATG CTTATTTCGC CCCTGACCCG TTACGATGGC
AAGTCGGCCA TCTTAAACGA GGACCGGCAG ATACAGATTG TCGCGCACCG TCTGCTGCAG
AAGGCCTCGC AGCTTTCCCG CAGGCCGCAC AGCAACGATG AGATCCCCGT TATTTTCGAA
CAATATCCGT GGCGACATAG AGCGGAGGAG CCCTATCGCG CAAAACTGGT TGCCGTGACC
TATTTCGAGC CATGGGATTG GGTTATTGTG GCCGGGGCCT ATCGGGACGA TTACGCCGAT
ATACAGAACC GTTTCGTCGA TTCGCTATCG CGGACAGTCT TATCGATCTC GGCCGCTGCG
TTGGGCATAG TGCTGCTTTC CCTGGTGATC GGTTTTTATG TCTCCAGGGG TATTGTGCGT
CCTCTGGAAA GGGCTATCGC ACTGTTCGAG CGTATCGGAA AAGGTCGTCT CGACCGGCAT
TTGAATATGA CTCAGGGCGA TGAAATCGGG CAGTTGGCCC GGGCTTTCGA CCGCATGATC
GATAATCTCA AGGACGTGAC GGCCTCGCGT AACGAACTCA ATCGGGAGAT TATCGAACGC
ACCCGCGCTG AATCGGAGCT GCGAGCCACA TCCGCGCAAC GCCAGGAATT GGAGTCGATT
GTCAATCAGA GTCCGGCGGT GGCCTTTTTG TGGCGGCTGA GAGATAAGTG GGCGGCGGAG
TTTGTGTCCG ACAATATTCG GCAGTTCGGT TACGAGCCCA CGGATTTTAC TTCCGGCAAG
GTCGATTTTT TGTCCATTGT GCACCCGGAC GACGTGGAAA AAGCATTATC TGCAGCGATC
TCGGCAATAA AGCGGGGACG TGACGAACAG TTATCACTGG AGTTTCGCCT GATCAAATAC
AACGGCGATA TTGCCTGGGT CGATGTGCGG CTTTGGCTTG GCCGCGACCA AGGCGATGCG
GTTACCCATT TTCAGGGCGT CATGCTCGAT GTCAGCGATC GCAAAAAGGC GCAGGAACAG
GTTCGCCAGT TGGCTTTTTA CGATGCTCTG ACCGGTCTGC CGAATCGTAC ATTGCTGGCC
AATCGACTCG ACCAAAGTCT TGCTCAGGCG CAGCGCGATG GCAGGATGCT GGCCCTGCTG
TACCTGGATC TCGATCGCTT CAAGGAGATA AACGATACCT ATGGGCACGC TGCGGGAGAT
ATGGTGTTGC AGGCTGCGGC CCAACGCCTG AACTCCTGTA TCCGCCGCAA CGATACCGTG
GCGCGTCTTG GCGGCGACGA ATTCGTGGTG CTTTTGCCGG GCCTGGAGAA CGTCGACCAG
CCCACGACCG TGGCGGAGAA GATCCTCAAG GTTATGAAGG TGCCGTTTCA GGTCGAGTCC
CAGCAGCTTA ATGTGACGCC CAGCATAGGC ATGGTGCTTT ATCCGGAGCA TGGTCAGGAG
TTGGGCGTAT TGCTGAAGAG GGCGGATATC GCCATGTATG CCGCCAAGAG CCGGGGCCGT
AACGGTTACG CCTGTTTTTC CGAGGAGATG GAGAAGGACA GCCAGGTAGT TGGGACCAGT
CTTCGGGCTC ACCCCTTAAA GCCCCTGGAG TGCATCGCGC GGCCCGAACT TGCTGCGTCA
CGAAAACCGC AGAAAAAAGA CCGCTGA
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| Protein sequence | MKIRTKIIGM GLMLVLITAF TIVGISIDQV HVLDTAIDEE MESFIHNETR KVAESVYLMC
RSVQQLQDES LKRNLDVATK LLDKQGGLSF SPERVRWSAE NQFDKSVKAI ELPKVLVGAR
WLGQNADITR ESPIVDQVQK TLGVTCTLFQ RMNESGDMLR VATNVLNDDG TRAIGTYIPQ
RNPDGSLNPV IGALMSGKPY VGSSFVVNDW YVTRYEPIMD NTGKHLVGAL YVGYRQESLE
SLRSGILDLV VGKTGYVYIL GSKGSQRGKM LISPLTRYDG KSAILNEDRQ IQIVAHRLLQ
KASQLSRRPH SNDEIPVIFE QYPWRHRAEE PYRAKLVAVT YFEPWDWVIV AGAYRDDYAD
IQNRFVDSLS RTVLSISAAA LGIVLLSLVI GFYVSRGIVR PLERAIALFE RIGKGRLDRH
LNMTQGDEIG QLARAFDRMI DNLKDVTASR NELNREIIER TRAESELRAT SAQRQELESI
VNQSPAVAFL WRLRDKWAAE FVSDNIRQFG YEPTDFTSGK VDFLSIVHPD DVEKALSAAI
SAIKRGRDEQ LSLEFRLIKY NGDIAWVDVR LWLGRDQGDA VTHFQGVMLD VSDRKKAQEQ
VRQLAFYDAL TGLPNRTLLA NRLDQSLAQA QRDGRMLALL YLDLDRFKEI NDTYGHAAGD
MVLQAAAQRL NSCIRRNDTV ARLGGDEFVV LLPGLENVDQ PTTVAEKILK VMKVPFQVES
QQLNVTPSIG MVLYPEHGQE LGVLLKRADI AMYAAKSRGR NGYACFSEEM EKDSQVVGTS
LRAHPLKPLE CIARPELAAS RKPQKKDR
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