Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_1039 |
Symbol | |
ID | 3723941 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | - |
Start bp | 1216731 |
End bp | 1217462 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637750630 |
Product | LysM domain-containing protein |
Protein accession | YP_356459 |
Protein GI | 77918644 |
COG category | [S] Function unknown |
COG ID | [COG1652] Uncharacterized protein containing LysM domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.00000199986 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAGAC TTGTTTTACT TTTGCTGACT CTGCTTATGA TGGCGGGGGG GTGTGTCGCC CCCCCGCTAC AGGAGTTGCA ATCGGCCCGC ACCGCGCTGG ACGAAGCCCT GGCGGCGGAA GCCGCCGTAC TGGCACCCAA CGAATATCAG GCAGCTCAAG ATGCCCTGCG TGACGGCGAA GCTCTGGTCG ACAAAAAGAA ATACAAACTC GCCAGAGAGA TCCTGCCTTT TGCCGAGGCC CACGCCCGCC GTGCGATTTT GCAGGCGCAA CGGGAGCAGG CAGACAGGGA ATTACAGAAA ATCCGCTCGC AGGAACTTCT GCGAACCGCG CAGCTGCCCC ACGAACCGGT TCGTCAGCCA ACCCCGCAAA CGCGTAAAGC AATTACCACC CGTCCCGTTT CGCCACCCAA GCCAAAACCC CGTCCGATCC TGACGGTTTA TCGCGTCGGA GCCGGTGAAA CCCTGTGGAC GATTGCCTCG CAGCGGGAAA TCTACGGCGA TCCTCTGCTC TGGCCATTAC TCTACCAGGC CAACCGCGAC CAGATACGCG ATCCCAGGCA GGTTTATCCA GGACAGTCTT TGAGCATTCC ACGCAAACTG ACCGAAGAGG AAAAGGCCAC GGCCCGTGAA AAAGCTCTCA GGTCAGAGAT TTTCCCCGTT GGTTCGGAAT CCCCCGCAAA GGATACCTCC GGACATAAGC CTGCCGCACC CAATAACGCA CCTTCGAATT AA
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Protein sequence | MARLVLLLLT LLMMAGGCVA PPLQELQSAR TALDEALAAE AAVLAPNEYQ AAQDALRDGE ALVDKKKYKL AREILPFAEA HARRAILQAQ REQADRELQK IRSQELLRTA QLPHEPVRQP TPQTRKAITT RPVSPPKPKP RPILTVYRVG AGETLWTIAS QREIYGDPLL WPLLYQANRD QIRDPRQVYP GQSLSIPRKL TEEEKATARE KALRSEIFPV GSESPAKDTS GHKPAAPNNA PSN
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