Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_0388 |
Symbol | mshE |
ID | 3723332 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | + |
Start bp | 477834 |
End bp | 479618 |
Gene Length | 1785 bp |
Protein Length | 594 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637749973 |
Product | MshA biogenesis protein MshE |
Protein accession | YP_355818 |
Protein GI | 77918003 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.000356112 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGGCAC GCAAAAAAAT TCGCATCGGT GAATTGCTGG TGCAGCATCA TATCATCAGC GAGGAGCAGT TGAATACCGC CCTGGCTGAG CAGAAACGCA CCGGCAGTAA ACTGGGGCAC ACCCTGGTCG AATTGGGCTA TCTCAGCCCG ACCGGCTTTC TCAAGTTTCT CGGCCAGCAG TTGCAGATCC CCTTTATCGA TCTGCGGCAT TATCAATACA AGGCCGAGAC GGTGCGCCTG TTGCCGGAAA TTTACGTGCG ACGCTTTCGC GCCCTGGTAT TGGCTGAAGA AGGCGACGGT CTGCTGGTCG GCATGGCCGA TCCCACAGAT ATCTTCGCGT TTGACGAGTT GCGCCGGATT CTCAAGCGCC CCGTCAAGCT GGCCGTGGTC GGTGAAGACG AACTCCTCGA TATCGTCGAT CGCATTTATC GGCGCACCGA TGAAATCATT CATATCGCCG GTGAGCTCAG CGAAGAGCTG GGCGAAGGCG GTATCGACCT GGAGAGTCTG CTTTCGAGCA GCAATATCGA AGATGCCCCG GTTGTGCGTC TGCTGCACAC CCTGTTTGAG GATGCGGTGC AGATCGGCGC CTCGGACATT CATATCGAAC CGGACGAGTC GGTGTTGCGC ATCCGGCAGC GCGTCGACGG TATCCTGCAC GAACAGGTGA TGAAGGAAAA GCGCATCGGC GGGGCTCTGG TGTCGCGCCT GAAGCTGATG AGCGGCCTGG ATATTTCCGA GCGTCGTCTG CCCCAGGATG GGCGATTCAA CATCCGCGTG CGGGGCCGCA GCATCGACAT TCGTCTGTCC ACCATGCCGC TGCAATTCGG CGAATCGGTG GTCATGCGTC TGCTCGACCA GTCCGGTGGT TTGCTTGCCT TGGAACAGAT CGGAATGCCT GAAGGCCTGT TGCGGCGTTT CCATAATCTT ATCAAGCGGC CCCACGGGCT GGTGCTGGTA ACCGGACCGA CGGGTAGCGG CAAGACCACC ACCCTTTACG GGGCCCTCAA CGCCCTCAAC GATACCAGCA AAAAGATCAT TACCGTCGAG GATCCGGTGG AATATCGCCT GCCGCGCATC AACCAGGTGC AGGTGCAAAG CCGTATCGAT CTGTCCTTCG CGCGGGTCCT GCGGGCCGCC CTGCGCCAGG ACCCCGACGT GGTCATGGTC GGCGAGATGC GCGACCAGGA AACCGCCCAG ATCGGTCTGC GCGCCGCCAT GACCGGCCAC CTGGTACTGT CCACCCTGCA TACCAACGAT GCCGTGAGCA CCGCACTGCG GCTGCTCGAT ATGGGCGCCG AAGGTTTTGT GGTCGGCAGC TCGCTGCTGG CCATCCTGGC ACAGCGCCTG GTACGCCGTG TCTGTGAAAG CTGTATGGAG GACGATCCCC TCGACGCGGG CCAGCGCAGC TGGCTGGCGG CCATGGTCGG GCCGGAAGCC CACCGACAGG TTTTCAAGCG TGGCGCCGGG TGTCCGCGCT GCCATAACAC CGGTTACCAC GGGCGTATCG GTATTTTCGA GTTGCTGCAG ATCGACACGT CGTTGGCCGA CGCCCTGCGT CGCAGCGACA GCGCCGGATT CGCCGAGCTG GCCCGTCGTC AGCCCGGCTT CCAAACCCTT TCCATGGCGG CTTACGATTA TGCCTGCCAG GGCGTCACCA GCATGGAAGA GGTGCTGCGC GTTTCCGGCC AGCTCGAAGA TTTTAATTCT GACTCCGGTC GGTATGCCGG TCAGGATCTA ACAGAGGATG ATGCGGATGC CACAGTTCCG GTACCAGGCA CGTAA
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Protein sequence | MTARKKIRIG ELLVQHHIIS EEQLNTALAE QKRTGSKLGH TLVELGYLSP TGFLKFLGQQ LQIPFIDLRH YQYKAETVRL LPEIYVRRFR ALVLAEEGDG LLVGMADPTD IFAFDELRRI LKRPVKLAVV GEDELLDIVD RIYRRTDEII HIAGELSEEL GEGGIDLESL LSSSNIEDAP VVRLLHTLFE DAVQIGASDI HIEPDESVLR IRQRVDGILH EQVMKEKRIG GALVSRLKLM SGLDISERRL PQDGRFNIRV RGRSIDIRLS TMPLQFGESV VMRLLDQSGG LLALEQIGMP EGLLRRFHNL IKRPHGLVLV TGPTGSGKTT TLYGALNALN DTSKKIITVE DPVEYRLPRI NQVQVQSRID LSFARVLRAA LRQDPDVVMV GEMRDQETAQ IGLRAAMTGH LVLSTLHTND AVSTALRLLD MGAEGFVVGS SLLAILAQRL VRRVCESCME DDPLDAGQRS WLAAMVGPEA HRQVFKRGAG CPRCHNTGYH GRIGIFELLQ IDTSLADALR RSDSAGFAEL ARRQPGFQTL SMAAYDYACQ GVTSMEEVLR VSGQLEDFNS DSGRYAGQDL TEDDADATVP VPGT
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