Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_0328 |
Symbol | deaD |
ID | 3725919 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | + |
Start bp | 410936 |
End bp | 412687 |
Gene Length | 1752 bp |
Protein Length | 583 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637749912 |
Product | cold-shock inducible ATP-independent RNA helicase |
Protein accession | YP_355758 |
Protein GI | 77917943 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0000000011259 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGAAG AAGTGCTTAC CACCTTTGCC GAATTATCTT TGTGCCCCGA AATCAATCGC GTTATTGAGG AAATCGGGTA CGAAACACCG TCTCCCATCC AGGCGCGCAG TATCCCGCCG TTGCTGGAAG GCCGGGATCT TTTGGGTCAG GCCCAGACCG GTACGGGGAA AACCGCAGCC TTTGCCCTGC CGTTACTCAG TCGTCTCGAT TTGTCGCTGC GAAGCCCGCA GGTGCTGGTG TTGACCCCGA CACGCGAGCT GGCCTTGCAG GTTGCCGAGG CGGTGCAGAC CTATGCCCGC CATCTGCAGG GGTTTCATGT GCTGCCCGTG TATGGAGGAC AGAATATGGG ACAACAGTTG CGCCAGTTGC AGCGCGGTGC CCATGTCGTG GTCGGTACTC CGGGGCGCAT CCAGGATCAT CTGCGGCGCG GCACTCTGAA GCTCGATCGC CTGTCCTGCG TGGTGGTCGA CGAGGCCGAT GAGATGCTTA AAATGGGGTT TATCGACGAT GTCGAGCAGA TTCTTGAGCA TGCGCCGGAA CAGCGGCAGA CGGCTCTTTT CTCCGCCACC ATGCCCAACG AGGTGCTCAA GGTCGCGCGT CGTCACCTGC GGGAACCCGT CGAGGTGCGC ATCAAGGCCA AAACCTCCAC GGTTGAGACC ATTTCCCAGC GCTTTTGGCA GGTCAGGGGG GTGCGTAAGC TCGATGCCCT GACGAGGATT CTCGAGGCCG AAGACATCGA CGCCATGATC GTTTTCGTGC GGACCAAGAT TGCCACTGTC GAGTTGGCGG AGAAGCTCGA GGCGCGGGGG TTTTCCAGTG CGGCTTTGAA CGGCGATATG ACCCAGGCTC TGCGGGAGAA AACGGTTGAA CGCCTCAAAA GCGGGAGCCT CGATATCGTT GTCGCCACCG ATGTCGCGGC CCGTGGTCTT GATGTTCAGC GCATCAGCCA TGTGGTCAAC TATGATATCC CTTACGACAC GGAATCTTAC GTACATCGCA TCGGTCGTAC CGGCCGGGCG GGGCGCGAAG GTTCGGCTAT CCTGTTTGTG GCTCCCCGCG AGCGACGTAT GCTCGCAGCG ATCGAACAGG CGACGCGGCA GAAGATCGCG CCCATGAAAC TGCCGAGTCG CCAGGACATT ACCAATCGGC GGGTCGCTCT TTTCAAGGAG CAGATTCTCG ATGCCATGCA GTCGCAGGAT CTTGAGTTTT TCGAAGATTT GATCGACGGT ATTCAGCAGG AATTCGATAC CGAACCCCGA ACCGTTGCCG CGGCTTTGAC GTATCTTCTG CAGAAGGACC GCCCTCTGCT TCCTGATGAG GAGGCTTTCG AGGAGGTTCT GCCGGCTTCT GGCGGACGGT TCGATGGTGG CGGCCGGAGT CATGCCGACG AGGGGCTCCA GCGCTACCGC ATCGAGGTCG GTCGGGTTCA TGGCGTGGTA CCCGGGCACA TTGTCGGTGC TATCGCCAAC GAGGCGAAAA TCAGCAGTCG CGATATCGGT CAGATAAAGA TCTATCACGA TTTCAGTTTG GTTGACCTGC CAGCCGATCT TTCACCTGCC GTTATGCGCC ATTTGCAAAA GGTCTGGGTT TGCGGTCAGC AGTTGCAGCT TGTCCCCGAC CTCGGCCCCG GCCCTCGCCA GGAAAGGCCT CCCAGGCGTC GCTCCGGCGG GAGATCCTTC GACAAGCGCG GTGGCAAACC TGGACGGAAG AAATTTTCCG GTGGGAAGCG CCCGCCCAAA AAGACGCGAT AG
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Protein sequence | MTEEVLTTFA ELSLCPEINR VIEEIGYETP SPIQARSIPP LLEGRDLLGQ AQTGTGKTAA FALPLLSRLD LSLRSPQVLV LTPTRELALQ VAEAVQTYAR HLQGFHVLPV YGGQNMGQQL RQLQRGAHVV VGTPGRIQDH LRRGTLKLDR LSCVVVDEAD EMLKMGFIDD VEQILEHAPE QRQTALFSAT MPNEVLKVAR RHLREPVEVR IKAKTSTVET ISQRFWQVRG VRKLDALTRI LEAEDIDAMI VFVRTKIATV ELAEKLEARG FSSAALNGDM TQALREKTVE RLKSGSLDIV VATDVAARGL DVQRISHVVN YDIPYDTESY VHRIGRTGRA GREGSAILFV APRERRMLAA IEQATRQKIA PMKLPSRQDI TNRRVALFKE QILDAMQSQD LEFFEDLIDG IQQEFDTEPR TVAAALTYLL QKDRPLLPDE EAFEEVLPAS GGRFDGGGRS HADEGLQRYR IEVGRVHGVV PGHIVGAIAN EAKISSRDIG QIKIYHDFSL VDLPADLSPA VMRHLQKVWV CGQQLQLVPD LGPGPRQERP PRRRSGGRSF DKRGGKPGRK KFSGGKRPPK KTR
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