Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_2167 |
Symbol | |
ID | 4909040 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | + |
Start bp | 2002915 |
End bp | 2004201 |
Gene Length | 1287 bp |
Protein Length | 428 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640125921 |
Product | nodulation efficiency protein NfeD |
Protein accession | YP_001057048 |
Protein GI | 126460770 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1030] Membrane-bound serine protease (ClpP class) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGGCGG CTAGCCTATT GCTCGTCCTA GCAGTATTCC TGCACGCGTA CACTGTGTCC ACGTTTTACG TGGTTGAGAT AAATAACGTA ATTGGGCCTT ACACTCTTTC CCAAGTCCAG CGGGCCATAT CTCTTGCTGA ACAAAATAAC GGGGCTGTTC TTCTACTTCT CTCTACCCCA GGCGGCCTGG CTGACACCAC GCTCCAGATA ATGAGGGAGA TAGGCAACTC TCCCGTCCCC GTAATTGGCT ACGTCTACCC CGACTATAGC TATGCCTGGT CTGCTGGCAC ATACATCCTA ATGTCTACTC ACATAGCAGC CATGGCGCCT CACACCGTCA TAGGCTCTTG TCAGCCTATT GCCGGGGGGA CCCCTATCAA CGAGAGCAAA GTCTTAAACG CGTTAATAGG GTACCTTGAA ACAGTATCCA GCTCCTATGG CCGCAACGGG ACATTTGCAA GACTATGTAT TACGCAGAAC GTAAACCTAA ACGCAGAAGA GGCATTACGC TACAAGGTGA TTAACCTAAT TGCTATAGAT GTGGGAGACT TAATCCGGCA GATAAATGGG ACAACTATAT TGTTGAGAAA CAAGCCCACG GTCCTTGTGG TAAAGGCCAC TGCAACAGTT ACAGTACAGC CCACACTCAC CGAGACTCTT CAAATGTGGC TAAGCGACCC AGTGGTCTCC AGCATTTTAT CACTGCTGGC GTTTATACTT CTACTTGCGG CGTTTCTCAC AGGACACCCG GCCGCGGCTG TGGCCGCCAT TATTCTGCTA ATTTTGTCCA CGTTTACTAT ACTGCCCACC GCGTGGCTTG GGGTAGCTTT GATTATAATG GGCGCCGTGC TTATCATGGC GGAGGCGCTT ATGGGGATGC CGGCCCACGG GGCCGTAGCC GCCGTGGGGG CCGTGCTATT AGTGGCAGGA TTTCTGTCAA CATATCCAGC GAACGTCTTT GGGGGCGAGC TCATTAGGAT TGAGAATTGG TGGCTAATAG AGGCGGGGCT CTATATAAAC ATCGCAGTGC TAGTAGGATT TTTGGCTTTT ATGGTATTTA AAGCGGTGAC CGTACACCGT AAAAGGCCTC CCTCAGAGAT ACTAACCAGT TTGAAGGGCG TAGAGGGTGT GGCAATTGAG GATATTGGCC CTGACAAGCC TGGCTTTGTC AAAGTATTTG GGGAATACTG GAGAGCCGTG GCCAACAAGC CTATAAAAAG CGGGTGCAGA GTGCGCGTGG TAGAGCTAAG GGGAGACTTC TTGGTTGTAG ATTCCGAGGA GTGTTAA
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Protein sequence | MRAASLLLVL AVFLHAYTVS TFYVVEINNV IGPYTLSQVQ RAISLAEQNN GAVLLLLSTP GGLADTTLQI MREIGNSPVP VIGYVYPDYS YAWSAGTYIL MSTHIAAMAP HTVIGSCQPI AGGTPINESK VLNALIGYLE TVSSSYGRNG TFARLCITQN VNLNAEEALR YKVINLIAID VGDLIRQING TTILLRNKPT VLVVKATATV TVQPTLTETL QMWLSDPVVS SILSLLAFIL LLAAFLTGHP AAAVAAIILL ILSTFTILPT AWLGVALIIM GAVLIMAEAL MGMPAHGAVA AVGAVLLVAG FLSTYPANVF GGELIRIENW WLIEAGLYIN IAVLVGFLAF MVFKAVTVHR KRPPSEILTS LKGVEGVAIE DIGPDKPGFV KVFGEYWRAV ANKPIKSGCR VRVVELRGDF LVVDSEEC
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