Gene Pcal_2167 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_2167 
Symbol 
ID4909040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp2002915 
End bp2004201 
Gene Length1287 bp 
Protein Length428 aa 
Translation table11 
GC content51% 
IMG OID640125921 
Productnodulation efficiency protein NfeD 
Protein accessionYP_001057048 
Protein GI126460770 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1030] Membrane-bound serine protease (ClpP class) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGGCGG CTAGCCTATT GCTCGTCCTA GCAGTATTCC TGCACGCGTA CACTGTGTCC 
ACGTTTTACG TGGTTGAGAT AAATAACGTA ATTGGGCCTT ACACTCTTTC CCAAGTCCAG
CGGGCCATAT CTCTTGCTGA ACAAAATAAC GGGGCTGTTC TTCTACTTCT CTCTACCCCA
GGCGGCCTGG CTGACACCAC GCTCCAGATA ATGAGGGAGA TAGGCAACTC TCCCGTCCCC
GTAATTGGCT ACGTCTACCC CGACTATAGC TATGCCTGGT CTGCTGGCAC ATACATCCTA
ATGTCTACTC ACATAGCAGC CATGGCGCCT CACACCGTCA TAGGCTCTTG TCAGCCTATT
GCCGGGGGGA CCCCTATCAA CGAGAGCAAA GTCTTAAACG CGTTAATAGG GTACCTTGAA
ACAGTATCCA GCTCCTATGG CCGCAACGGG ACATTTGCAA GACTATGTAT TACGCAGAAC
GTAAACCTAA ACGCAGAAGA GGCATTACGC TACAAGGTGA TTAACCTAAT TGCTATAGAT
GTGGGAGACT TAATCCGGCA GATAAATGGG ACAACTATAT TGTTGAGAAA CAAGCCCACG
GTCCTTGTGG TAAAGGCCAC TGCAACAGTT ACAGTACAGC CCACACTCAC CGAGACTCTT
CAAATGTGGC TAAGCGACCC AGTGGTCTCC AGCATTTTAT CACTGCTGGC GTTTATACTT
CTACTTGCGG CGTTTCTCAC AGGACACCCG GCCGCGGCTG TGGCCGCCAT TATTCTGCTA
ATTTTGTCCA CGTTTACTAT ACTGCCCACC GCGTGGCTTG GGGTAGCTTT GATTATAATG
GGCGCCGTGC TTATCATGGC GGAGGCGCTT ATGGGGATGC CGGCCCACGG GGCCGTAGCC
GCCGTGGGGG CCGTGCTATT AGTGGCAGGA TTTCTGTCAA CATATCCAGC GAACGTCTTT
GGGGGCGAGC TCATTAGGAT TGAGAATTGG TGGCTAATAG AGGCGGGGCT CTATATAAAC
ATCGCAGTGC TAGTAGGATT TTTGGCTTTT ATGGTATTTA AAGCGGTGAC CGTACACCGT
AAAAGGCCTC CCTCAGAGAT ACTAACCAGT TTGAAGGGCG TAGAGGGTGT GGCAATTGAG
GATATTGGCC CTGACAAGCC TGGCTTTGTC AAAGTATTTG GGGAATACTG GAGAGCCGTG
GCCAACAAGC CTATAAAAAG CGGGTGCAGA GTGCGCGTGG TAGAGCTAAG GGGAGACTTC
TTGGTTGTAG ATTCCGAGGA GTGTTAA
 
Protein sequence
MRAASLLLVL AVFLHAYTVS TFYVVEINNV IGPYTLSQVQ RAISLAEQNN GAVLLLLSTP 
GGLADTTLQI MREIGNSPVP VIGYVYPDYS YAWSAGTYIL MSTHIAAMAP HTVIGSCQPI
AGGTPINESK VLNALIGYLE TVSSSYGRNG TFARLCITQN VNLNAEEALR YKVINLIAID
VGDLIRQING TTILLRNKPT VLVVKATATV TVQPTLTETL QMWLSDPVVS SILSLLAFIL
LLAAFLTGHP AAAVAAIILL ILSTFTILPT AWLGVALIIM GAVLIMAEAL MGMPAHGAVA
AVGAVLLVAG FLSTYPANVF GGELIRIENW WLIEAGLYIN IAVLVGFLAF MVFKAVTVHR
KRPPSEILTS LKGVEGVAIE DIGPDKPGFV KVFGEYWRAV ANKPIKSGCR VRVVELRGDF
LVVDSEEC