| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2161 |
|---|
| Symbol | |
|---|
| ID | 4908664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1998705 |
|---|
| End bp | 1999511 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640125915 |
|---|
| Product | GTP-binding protein, HSR1-related |
|---|
| Protein accession | YP_001057042 |
|---|
| Protein GI | 126460764 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1161] Predicted GTPases |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGAGA CGTGGAGACT CGTTCGTAGG GTAGTAGAAG ATGGCGACAT TGTGTTAGAG
GTGTTAGACG CGAGAGACCC TATTGCCACT AGGAACGAGG AGGTTGAACG ACTAGCGGAA
AGGCTGGGGA AAAGGCTGTT GGTTGTATTA AACAAGGCGG ATTTAGTGGA GAGGGAGTTA
ATGGAGGAGT GGAAGTCGTA TTTCCAAAGC GTTGGCATAC CTGCGGTCTA CATAAGCGCA
AAGCACAGGC TTGGCACAAG GAGGCTTATA GCGTCCATTA GGGACCTTGC GCCGCGTATT
CCCGCAACAG TAGTTGTAGT GGGGTACCCC AACGTGGGCA AGTCTACAAT AATAAACTAC
CTAAAGGGTA GGCATGTTGC ACCAACTAGC CCAAAGCCGG GGTGGACGAG GGGAGAGCAA
ATAGTTAGAG CAAAGACGTG GCTCCTCGTA ATTGACACGC CCGGCGTTGT CAAGACGCAG
TCAACTGGCG ACTTGGCGCT CGATGTAGTT AGGGGGCTGG TCGACCCAGG GACCGTGGAC
GACCCAGTGC CCTACGCCTA CGCGCTAATA AGGAGAATCT TGTCCTACAA CCCCGCCGCG
CTTAAAGAGG CGTACGGCAT AGAGAACGCG GGCGAGGACG TCCTAGAAGA GATTGGCCGT
GTTAAACACA GGCTTAGAAA AGGCGGCAGA GTAGACGTAG AGGAGGCGGC TAGAATTGTG
CTGAAAGATT GGATCACTGG GCGGTTGAGG TACGCCGTGC CGCCGCCCAG CGCCGAGAAG
CGTCAGAGAG GGAGTGACAA CTCTTGA
|
|---|
| Protein sequence | MKETWRLVRR VVEDGDIVLE VLDARDPIAT RNEEVERLAE RLGKRLLVVL NKADLVEREL
MEEWKSYFQS VGIPAVYISA KHRLGTRRLI ASIRDLAPRI PATVVVVGYP NVGKSTIINY
LKGRHVAPTS PKPGWTRGEQ IVRAKTWLLV IDTPGVVKTQ STGDLALDVV RGLVDPGTVD
DPVPYAYALI RRILSYNPAA LKEAYGIENA GEDVLEEIGR VKHRLRKGGR VDVEEAARIV
LKDWITGRLR YAVPPPSAEK RQRGSDNS
|
|---|
| |