Gene Pcal_2157 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_2157 
Symbol 
ID4908543 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1994690 
End bp1995976 
Gene Length1287 bp 
Protein Length428 aa 
Translation table11 
GC content52% 
IMG OID640125911 
Productphosphomannomutase 
Protein accessionYP_001057038 
Protein GI126460760 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1109] Phosphomannomutase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCGTGT TTAAGGCGTA CGATATTAGG GGCGTTGTAG ATGTTGAACT GACGATGGAC 
CTCGTAGAGA AGATCGGCTT CGCCATTACA AAGTTCTTCC AAGGAAGCGA CATAGTCGTG
GGGATGGACG TGAGGACGCA CTCGTTTAGA ATTGTAGAGG CTTTGTCGAG AGGACTCACC
GCTGGAGGAG ACGTCGTCTT TCTCGGCACA TCAACTACTC CTATGACGCA CTACGCCTCC
TACACGTTGG GCAAACCGGC CGTCATGATA ACGGCCTCGC ACAACCCGCC AGAGTACAAC
GGCCTAAAGA TAATGAGGCC CGGCGGACTA GATCTTGAAA GCCACGAAAT CCAACAGTTA
GCCGCTTTAC TGGAGCCTCC GCCAGAGAGG AGAAAAGGCG TAATCTATGT ATACGACGCA
CTTACAAAAT ACACAGACGA ATTAGCTAAG AGGTTCGGAA GGATAGACAT GTCTATAGGA
TTTGACCCGG CCAATGCGGC CGGAGTTATA CTCAAGCCAC TTCTCAAGGC GACTTTTAAA
AACGTCGTTG CCATAAACGA CTACCCAGAT GGACGCTTCC CCGCCCATCC CCCCGACCCC
GAGAAGGCCG AGAATTTAAA ACAGCTACAG GAACTAGTGC TGTCTCACAA GTTAGACGCG
GGCGTGGCTT TAGACGGCGA CTGTGACCGA GTGGGAATAG TCACGGCTAG CGGCAAAATC
TTTAGGCCTG AAAAAATGGT CTATGCGCTT CTCAACTATT ACGCGAGACC GGGAGATGTG
GTAGTGCTAG ACGTCACTAT GCCTCTCTAC TTGGAAAAAG TGGCAGAGGA AAGGGGGGTC
AAAATTGTGC GACAGAGGGT AGGCCACAGC TTTCAAAAGC CCACGGCCCT GCGCGTCAAC
GCGCTGTTCT GGGCTGAGTA TAGTGGACAC GTGGGGTTTA GAGACCACCA CTATTTCGAC
GACGGCATCT ACGCGGCGCT CCGCCTGTTT ACAATTTTAA CAGAGGCCGG AGTTACGCTC
GACAAAGTAA TAGAAGAGGC CCCAAAGGTG TACGAGGAGA GACTCGACAT AAGAACACAA
AACCCCAGAG CAGCCGTGGA AAAGGCCAAA GAAAGAGCCA AGGGGTTTGA AATATACGAA
CTAGACGGCT TAGACATACG GACAAGGGAT GGCAGACTGC TAATTAGGCC CAGCAACACG
GAGCCCGTGG TGAGGGTTAA GATAGAGGCC GAGAACAGGG AGGGCCTAGA GAAACTGAGA
CATTTGCTCT CTCAGCTTAT CTCATAA
 
Protein sequence
MTVFKAYDIR GVVDVELTMD LVEKIGFAIT KFFQGSDIVV GMDVRTHSFR IVEALSRGLT 
AGGDVVFLGT STTPMTHYAS YTLGKPAVMI TASHNPPEYN GLKIMRPGGL DLESHEIQQL
AALLEPPPER RKGVIYVYDA LTKYTDELAK RFGRIDMSIG FDPANAAGVI LKPLLKATFK
NVVAINDYPD GRFPAHPPDP EKAENLKQLQ ELVLSHKLDA GVALDGDCDR VGIVTASGKI
FRPEKMVYAL LNYYARPGDV VVLDVTMPLY LEKVAEERGV KIVRQRVGHS FQKPTALRVN
ALFWAEYSGH VGFRDHHYFD DGIYAALRLF TILTEAGVTL DKVIEEAPKV YEERLDIRTQ
NPRAAVEKAK ERAKGFEIYE LDGLDIRTRD GRLLIRPSNT EPVVRVKIEA ENREGLEKLR
HLLSQLIS