| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2020 |
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| Symbol | |
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| ID | 4910104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1873582 |
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| End bp | 1874946 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640125773 |
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| Product | tryptophan synthase subunit beta |
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| Protein accession | YP_001056901 |
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| Protein GI | 126460623 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1350] Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) |
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| TIGRFAM ID | [TIGR01415] pyridoxal-phosphate dependent TrpB-like enzyme |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000317407 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGTAGGT CGTCGACGGA GGAGTGGATG GTCCCCACTC GGTGGTACAA CATAGTGCCC
GACCTCCCCA AGCCGCTTCC TCCGTACCTA AAGCCGAATG GGGAGCCGGT TGCGCCCAAG
GACTTCGAGA TGCTCTTCGC CAGGGAGTTG GTTAGGCAGG AGTTTTCGCA GGAGAGGTGG
ATATCGATAC CGCGGGAGGT CAGAGACGTG TACCTGATAT GGAGGCCCAC CCCTCTGGTG
AGGGCCAGGA GGCTTGAAGA GGCCTTGAAG ACCCCCGCGC GCATTTACTA CAAGTTCGAG
GGCGTCTCGC CGCCGGGCTC CCACAAGCCC AACACGGCGG TGGCCCAGCT CTACTACGTC
TCAAGGGAGG GCGTGGGGAG AGTGACTACG GAGACTGGGG CCGGGCAGTG GGGCTCCTCC
GTCGCCTTCG CCGCGTCTCT CTTCGGCGTA AAGGCCACAG TCTACATGGT CAGAGCCTCG
TATTTGCAGA AGCCGTATAG GCGGGTGTTG ATGGAGCTCT GGGGGGCCGA GGTGGTGCCG
AGCCCCAGCG ACAGGACCGA GGCCGGCCGT AGGTTCCTCT CAGAGGACCC CAACCACCCA
GGGTCTCTGG GCATAGCCAT ATCCGAGGCC GTGGAGGATG CGGTCAAAAA CGGCGCAAAG
TACGTCCTAG GCTCCGTCTT AAACCACGTC CTGATACACC AGACGGTGAT AGGCCTCGAG
GCCCTGGAGC AGATTAGGCA GTTCGACGAC TACCCGGACT ACGTGGTGGG GGCCTGCGGC
GGTGGGAGCT CCTTCTCCGG CCTCTTCTGG CCTTTCTACT ACGAGAAGAA GGTGGGCAAG
GCGGAGAAGG ATGTGAAGTT CCTCGCCGTG GAGCCCAAGG CCGTGCCCAC GTTGACCAAG
GGGGAGTACC TCTACGACTT CGGCGACACG GCGGGCTTGA CCCCGTTGAT CAAGATGTTC
ACCATAGGCC ACGACTACAA GCCGCCTCCC ATACACGCCG GGGGCCTTAG ATACCACGGG
TGTGCCCCAA CGCTCTCCCT CCTGGTGGCA GAGGGGGAGG TAGGCGCCGT GGCGTACGGC
CAGAGGGAGG TCTTCGAGGC GGCGGTGCTC TTCGCCAGAA CCGAGGGCGT GGTTCCCGCG
CCTGAGTCTG CCCACGCGGT GAAGGCCGCC GTGGAGCTTG CCCTAGCCGC GAAGAGGGAG
GGGAGGCCAA TCACAATACT CTTCAACATG TCGGGCCACG GCCTCCTAGA CCTAGCCGCA
TACGACGAAT ACCTGCGGGG AGCTCTGCCA GACGTGGAGC CAAGCGCCGA GGCTCTCGCA
AAGCACATAG AAAAGGTTAG ACAACTACAG GCGGCGAGGC CCTAG
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| Protein sequence | MRRSSTEEWM VPTRWYNIVP DLPKPLPPYL KPNGEPVAPK DFEMLFAREL VRQEFSQERW
ISIPREVRDV YLIWRPTPLV RARRLEEALK TPARIYYKFE GVSPPGSHKP NTAVAQLYYV
SREGVGRVTT ETGAGQWGSS VAFAASLFGV KATVYMVRAS YLQKPYRRVL MELWGAEVVP
SPSDRTEAGR RFLSEDPNHP GSLGIAISEA VEDAVKNGAK YVLGSVLNHV LIHQTVIGLE
ALEQIRQFDD YPDYVVGACG GGSSFSGLFW PFYYEKKVGK AEKDVKFLAV EPKAVPTLTK
GEYLYDFGDT AGLTPLIKMF TIGHDYKPPP IHAGGLRYHG CAPTLSLLVA EGEVGAVAYG
QREVFEAAVL FARTEGVVPA PESAHAVKAA VELALAAKRE GRPITILFNM SGHGLLDLAA
YDEYLRGALP DVEPSAEALA KHIEKVRQLQ AARP
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