Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_1948 |
Symbol | |
ID | 4909741 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | - |
Start bp | 1812405 |
End bp | 1813151 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640125699 |
Product | electron transport protein SCO1/SenC |
Protein accession | YP_001056830 |
Protein GI | 126460552 |
COG category | [R] General function prediction only |
COG ID | [COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACCC GGTCTCTTAT CCTACTCGCA GTAGCCATAG TTCTCCCCTT TGTCGTCGCC CTCGTCATGC AGTCTGGACA GACCACCGCC GAGGAGCACA GCGGCCTATT TGAGCGGATT GTCCCCACGT GCTACATCCC AGGCCAGGAG CCAGCCGCCG CCGACTTTAC CCTAGTAGAC CAGTTCAACC GCACCGTCAC TCTCTCAGAG CTCTGGTCTA GGCCCGTCCT AATCACCTTC ACCTACAGCT GGTGCCCAGA CGTGTGCCCC ACAATGCACC TCGTCCTCAA CCGCACTCTG CCGATGATAA GGGGCTATAT AGGGGCTGTC TTAGACGTCT CTCTAGACCC CGAGAGAGAT ACGCCAAGGC GCCTATATGC ATATTCGACG GGCAATAGGT ACAACTGGAC TTTTCTCACA GGCGACCCGA AGACACTGGA GAGAGTGTGG TCGGCATACG GCGTCTATAG GTACGTGGAA CAGAGACCCA CAGGCCCCTA CATAGTCCAC AGCGTAGACT GGATCGTGGT AAAAGACGGA AAAATCCTAG GCAGAGTAAG AGGCCTCCCA TCCCCAGAAA CCCTCGCCAA GTACCTAATA GACATAGCAG AGAGAAGGTG CGGCTACTCC GCTCCCACGC CGACGTCACA GCCCACGACG GCAACACCTC CTGCCATCTC TACCACGTTG ATCATGATCA CGGCCGTCGG CGCAGCTGTC GTGGCGGCTT TGGCTAAGAG GAGATAG
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Protein sequence | MSTRSLILLA VAIVLPFVVA LVMQSGQTTA EEHSGLFERI VPTCYIPGQE PAAADFTLVD QFNRTVTLSE LWSRPVLITF TYSWCPDVCP TMHLVLNRTL PMIRGYIGAV LDVSLDPERD TPRRLYAYST GNRYNWTFLT GDPKTLERVW SAYGVYRYVE QRPTGPYIVH SVDWIVVKDG KILGRVRGLP SPETLAKYLI DIAERRCGYS APTPTSQPTT ATPPAISTTL IMITAVGAAV VAALAKRR
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