| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1946 |
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| Symbol | ubiA |
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| ID | 4909856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1810849 |
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| End bp | 1811688 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640125697 |
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| Product | protoheme IX farnesyltransferase |
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| Protein accession | YP_001056828 |
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| Protein GI | 126460550 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
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| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTTAAGC CTTATCTAGT GCTTTTGAAG CCGCGGGTTA TTTGGCTTTT GGTATTGGCG
AGTGTCGCTG GCTATGTATA TGCGGCGCCG GTGGTGGATT GGGGGAGTCT CTTGGCGTTG
GTGGTGGTGG GCGTCTTGTC GTCCGGGGGG GCCGCCGCCT TTAACCACGT ATTTGAGAGA
GACATCGACG CGTTGATGTC GAGGACTGCG GCGCGGCCGT TGCCCAGGGG GTTGGTCTCG
GTGGGGGCTG CGTTTGCCTA TGCCTCGGCC GTTTCGGCCC TAGGCGTCTT GCTCAGCCTC
GCGTGGCTGG GGCCTCTCCC GACGCTTTTT GTCGTGCTGG GGTGGTTTTC CTACGTCGTG
GTTTACACTG TGTGGCTGAA GCGGAGGAGC TGGCTCAACG TCTTGGCGGG GGGATTCGCG
GGCAACGCCT CATTCCTCAC CGGCTACGTC TTCGGGAGGG GGACGTTGGA CTGGCCCGGC
GTCTTGATGT CCTTCGCCGT ATATCTCTGG ATCCCGGCGC ACATATGGTC TCTGGCGTAT
AGGTACAGAG AGGACTACAG GCGGGCGGGT GTCCCCATGT TCTCCACAGT AGTCGACCAG
CGCACCGCGG TGGTGGCCAT TTCGCTCTTG AACATAGCGT CGGCGTTGTA CATGGCGTTC
CTCTATGTGC TCTTCGGGGG AGATCCCCTC GGCTATGTGT TTGTGGCCCC CGCGGTGGGC
CTCACCTTGT ACACAAGCGC GCTGGCCCTT GTGAAAAAGA GCGACGACGC CTTCTGGAAG
ATGTTCAAGG CCTCGTCCCC CGCCCTAGCC CTCTTCCTAA TCGCCCTAGT GTTGCACTAA
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| Protein sequence | MVKPYLVLLK PRVIWLLVLA SVAGYVYAAP VVDWGSLLAL VVVGVLSSGG AAAFNHVFER
DIDALMSRTA ARPLPRGLVS VGAAFAYASA VSALGVLLSL AWLGPLPTLF VVLGWFSYVV
VYTVWLKRRS WLNVLAGGFA GNASFLTGYV FGRGTLDWPG VLMSFAVYLW IPAHIWSLAY
RYREDYRRAG VPMFSTVVDQ RTAVVAISLL NIASALYMAF LYVLFGGDPL GYVFVAPAVG
LTLYTSALAL VKKSDDAFWK MFKASSPALA LFLIALVLH
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