| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1797 |
|---|
| Symbol | |
|---|
| ID | 4909642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1664268 |
|---|
| End bp | 1666829 |
|---|
| Gene Length | 2562 bp |
|---|
| Protein Length | 853 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640125546 |
|---|
| Product | ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| Protein accession | YP_001056680 |
|---|
| Protein GI | 126460402 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0973422 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACAGAG TCTTGAAGCT CAACGGCTCT GTGGAGCCCT TCCAGCCGGA GAAGCTGAGG
CGCTCAATTG AGCGCGCGGC GCAGGACGCG GGGGTGGAGG TGGACGGGGC GGCCGACATC
AAAGTGGAGA GAGACGTCGG CTCTTGGGAG CTCGCCGATT TGGTGCACGT GGAGCTTTTG
AAGAAGGCGA TTGAGAGGCC GGAGCTCGCC GAGGTGGCCA AGTCGCATCT CCTCGGCAGA
ATATACAAGG AGATATTTGG GAGAGACTTC CTGCGCGTTA AGTCTGACGA GGAGTACCAG
AGGAGGGCCC TGGCGGCCTT TGAGAAACTG GCGGGGGTGA TAAAGCCCGA GGCCTTGGAG
CTCTTGAGGC AGCTGAAGCT GAGGCCCGAG TTCGACCGCT CGCTGAGCTA CAACGCCCTT
AGGCTCTTCA CCAACGGCAA CTACGCGTTG AGGAGGCTGG ACTTCCAACT GGCCGAGACT
CCCTCCATGG CCGCGGCCAG GGTGGCCACC GCAGTGGCGA GAGACGTGGA GAGGGCAAGG
CTGTACTACG ACTACATCAC CTCGCTGAAG TTGATACCGG CGTCTCCCTA CTGGTTCAAC
GCCTGGACTA GCAAGGAGAT GTTTGCCTCC TGCTTCATTC TGATGATTGA GGATTGTTTG
TCGTCAATCA CACATCCTGG CAAGAGGTGT ATCTACGATG TGTTGACCAG ATCAGGTCTA
ATACAGCAGG CAGGAGGTGG TGTGGGCTAC GACTTCTCGC TCCTAAGGCC CGAGGGAGAC
GTGGTGAGGG GCTCCGCGGG CGTGGCCTCC GGCCCCATAT CCTTTATGAA GCTCTTTGAC
GCAAATGTGG AAGTCATTAA GCAGGGGGGC AAGAGGCGCG GCGCGCAGAT GGGCACGCTC
CACGTCTGGC ACCCAGACAT ACGCAAGTTC ATAAAGGCCA AGACGGGGGA GCTGAAGGAC
GTACACCTAC AGAACTTCAA CATCTCGGTG GTGGTGGATG ACGCTTTTAT GGAAAAGGCA
TTAGACGTAG ATAAAGATCC CAACTATCCT CTTGTCAATC CAAGGATTGT TGTAGAAAAA
TTGGGGATTA AGCCGATAGA GGTGTTAGAG CTCACGAGAG AGGTGCAACT ACCAAAAGAT
GCGACAGTGG GGTCAGTTAA TGCCAAAGAG CTATTCAGAG AGATCGTAGA GGGCGCGTGG
GACTCGGGCG ACCCCGGCCT GATCTTCAAG TCGAACATGA ATGCGTCGAA CTCACTGTTG
TATGTCAATG TAGATGGCGA CAGATATGTG TGGTTTGGTA CCAATCCTTG TGCCGAGGTG
CCCGGCGCTG ATAAAGACGT CTGCAACTTG ACCCATATAA ACCTTGTCAA ATTTGTGAAA
GAGGGGTGTA GCGGCCGCAC GTTGGAGGAA AAACTGGAGT GTATAGACTG GGCAGGCTTG
GCCGAGACAG CCCGCGTTGG CGTTAGATTT CTCGACGACG CCGTAGATAT ATCCACCACT
GGGATGAAAG ATGTAGATGA GACGTATCGG AAGATCCGCA AAATTGGTCT CGGCGTCATG
GGTCTCGCCG AGATGTTGAT AAAGTTGGAG ATCCCGTACG CCTCTTGGGA TGCCGTGACG
CTAGTTAACA GAGTGTTGGC GTGGATCTAT CTCAACGCCC TCGACGAGTC TGCAGAGCTG
GCGAGGGAGA GGGGGCCCTT TAAGTACTTC CACCAGTCCG ACTACGCGAG GGGAGTGATA
CCCGTGCTGA AGTACCAAGA CTTCGTCTGG TCTCGGTGGG AGAGGGTAAG GGCGGCGTAC
CCGCCGGAGT ACAGAGAGCT TGGGGACAGG CTAAAGGCCA TAACCTACGA GACGAGGAGG
TGGCTAGACG CCATGGCCAA GAGGTTCGGC AAGCCCACCC TGGCCGAGCT CTCGGAGAAG
GTTAAGGGCG GGGTGAGGAA CTCCGTGGTG ATGTCCGTGG CCCCCACGGG CCGCACCTCC
ATACTGGCGG GCACCACCAG CGGCGTAGAG CCCGTCTTCG CCCTGGCCTT CCTCCGCAAC
GTCACCGTCG GCACCCTGGT GGAGTACTAC TGGCCTGGCG TCGAGTATCT GAGGGCGAGG
GGTCTCTGGA CACCTGAGGT GAGGAGGGCG GTGGAGGAGA GCGGCATGTT GAGAGACGCC
CCCGTGCCAG AGGACGTGAA GCACTTGTTG GCCACGGCGA TGGAGATACA CTGGGCCTGG
CATGTACTGA TGCAAGCGTC AGCACAGCAG TGGGTGGATC AAGGCATATC GAAGACGATT
AATATGCCAG CTAACGCGAC CAAAGATGAC GTATATTGGG CGTTTGCTCT TGCATGGGCT
CTTGGGGTCA AGGGGATAAC GGTGTACCGC GACAAGTCTA AGTCTGTGCA AGTGATATAC
ACGGGCATTA AGCAGGAGAT CAAGAAGAAG CTCGCGGACA CCAAGATAGT GGTAAAGCCG
CTCTCCCTCG ACGCCACAAT CAGCGACGCG GCTGAGCAGG TCAAGCTCAA GGCGCTTGAG
GAGGGCAAAG ACCCCTACTG CAAGACCGGG GAGTGCGGCT AG
|
|---|
| Protein sequence | MYRVLKLNGS VEPFQPEKLR RSIERAAQDA GVEVDGAADI KVERDVGSWE LADLVHVELL
KKAIERPELA EVAKSHLLGR IYKEIFGRDF LRVKSDEEYQ RRALAAFEKL AGVIKPEALE
LLRQLKLRPE FDRSLSYNAL RLFTNGNYAL RRLDFQLAET PSMAAARVAT AVARDVERAR
LYYDYITSLK LIPASPYWFN AWTSKEMFAS CFILMIEDCL SSITHPGKRC IYDVLTRSGL
IQQAGGGVGY DFSLLRPEGD VVRGSAGVAS GPISFMKLFD ANVEVIKQGG KRRGAQMGTL
HVWHPDIRKF IKAKTGELKD VHLQNFNISV VVDDAFMEKA LDVDKDPNYP LVNPRIVVEK
LGIKPIEVLE LTREVQLPKD ATVGSVNAKE LFREIVEGAW DSGDPGLIFK SNMNASNSLL
YVNVDGDRYV WFGTNPCAEV PGADKDVCNL THINLVKFVK EGCSGRTLEE KLECIDWAGL
AETARVGVRF LDDAVDISTT GMKDVDETYR KIRKIGLGVM GLAEMLIKLE IPYASWDAVT
LVNRVLAWIY LNALDESAEL ARERGPFKYF HQSDYARGVI PVLKYQDFVW SRWERVRAAY
PPEYRELGDR LKAITYETRR WLDAMAKRFG KPTLAELSEK VKGGVRNSVV MSVAPTGRTS
ILAGTTSGVE PVFALAFLRN VTVGTLVEYY WPGVEYLRAR GLWTPEVRRA VEESGMLRDA
PVPEDVKHLL ATAMEIHWAW HVLMQASAQQ WVDQGISKTI NMPANATKDD VYWAFALAWA
LGVKGITVYR DKSKSVQVIY TGIKQEIKKK LADTKIVVKP LSLDATISDA AEQVKLKALE
EGKDPYCKTG ECG
|
|---|
| |