Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_1558 |
Symbol | |
ID | 4909954 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | + |
Start bp | 1450888 |
End bp | 1451496 |
Gene Length | 609 bp |
Protein Length | 202 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640125306 |
Product | cobalamin (vitamin B12) biosynthesis CbiM protein |
Protein accession | YP_001056442 |
Protein GI | 126460164 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0310] ABC-type Co2+ transport system, permease component |
TIGRFAM ID | [TIGR00123] cobalamin biosynthesis protein CbiM |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCATATCC CCGACGGGTG GCTTGACCCA TATTTGGCTG GTGCCACGTG GCTTATTGCG GCGGCCTATC TCGTTTTTAT GGTTAGGAAG ATTCCTAGGG AGAGGTGGCA GGTAATTGCG CCTGTTGCTG GGGCCATATT TGTGGCTCAG ATGTTGAACT GGCCTATTCC AGGGGGCACC TCTCTGCACT TCGTGGGCGG GGCATTCGCC GCTATTTATC TTGGGAACGC GTGGGAGGGC TCCGCCGTCA TTTCCCTCGT CTTGGCTGTG CAGACTTTGT TGTTCCACGA CGGCGGAATT ACCGCTTACG GCGCCAATTT CATAAACATG GGAATAGTGG CGCCGTGGGT CGGCCTCCTT ATATACAGGG CGTTGCAAAA TAGGCCTCGC ATAGCAAGTT TTTTTGCGGG ATGGATGAGC TTGTTTTTGG CGGGGTGTGC CGCGGGCATT GAAATCGGCG TAATGCCGAC AGTGGGATAC CCGCTGTCTG TCACTCTGCC GGCCATGGCC GTGCCGCACT TCCTCCTCGG CATTGTCGAA GGCGTTTTAA CGTCAGCTGT TTTGACGACC ATGGAAAGAT TACACGTGTA CGCATTTCCC AGGCTATGA
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Protein sequence | MHIPDGWLDP YLAGATWLIA AAYLVFMVRK IPRERWQVIA PVAGAIFVAQ MLNWPIPGGT SLHFVGGAFA AIYLGNAWEG SAVISLVLAV QTLLFHDGGI TAYGANFINM GIVAPWVGLL IYRALQNRPR IASFFAGWMS LFLAGCAAGI EIGVMPTVGY PLSVTLPAMA VPHFLLGIVE GVLTSAVLTT MERLHVYAFP RL
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