| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1461 |
|---|
| Symbol | |
|---|
| ID | 4909186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1363342 |
|---|
| End bp | 1364049 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640125211 |
|---|
| Product | uroporphyrinogen-III synthase (HemD) |
|---|
| Protein accession | YP_001056347 |
|---|
| Protein GI | 126460069 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1587] Uroporphyrinogen-III synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGGGTGG TGGTGACTAG TCCCAGGGCG GTGGAGCTGT TTGTGAGAGT GCTGGGGCGG
GAGAGAGTCG TGGCGGCGCC GGTGGTGAAG CTGGTGCCTC GGTCTATCTC TGCGGAGGAG
GTGGCGAAGG CCTTGGCGGG GGCTACCCAC GTGGTTTTTG TCTCGGGGGC CGTTGCGTAT
AGGTTGGCCG AGGTGTTGCA TGGGGCAGGC GCATTGTTTG CGGGCAGGGC TGTGGCCACG
GCGGAGGGGG CGAAGGGGGC TGTCATGGTG AAGAACAAGT TCGGGGTCGA GGCCTACCCT
GGCCAGACTT GGGAGGAGGT GGCGGCGTGG GCTAGGGGCT GCGGCGCCGC CGTGGTGTTT
CACCACGGAG AGTTCCACAG GGAGTTGGCC GAGGCGCTTG AGGCGCTGTG CGGCTCAGTG
GCCCACTTCC AGCTCTACGA CGCCGTTCCA GAGGACTTGG ACAAGATGCG CCTGCTCGTG
GAGCCCGGCG GCGACGTGTA CGTCTTCTTC AGCGGGGTGG CTGTGGAGTA CGCCGTGGAG
AACCCCTACG GCCTCCCCGT GGCGGAGAGG CTGAGGCGCG CCGTAAACGT GGCGGCGGGC
CCCGCGGTGG CAAAGGCCTT GGCCAAGTAC GGCATAGAGG CGGTGGTGCC GCCCTCGGGG
AGGCTGGGCG ACGTGGCGAA GTTCGTGGCA TCGCTTATAA GGGGGTAG
|
|---|
| Protein sequence | MRVVVTSPRA VELFVRVLGR ERVVAAPVVK LVPRSISAEE VAKALAGATH VVFVSGAVAY
RLAEVLHGAG ALFAGRAVAT AEGAKGAVMV KNKFGVEAYP GQTWEEVAAW ARGCGAAVVF
HHGEFHRELA EALEALCGSV AHFQLYDAVP EDLDKMRLLV EPGGDVYVFF SGVAVEYAVE
NPYGLPVAER LRRAVNVAAG PAVAKALAKY GIEAVVPPSG RLGDVAKFVA SLIRG
|
|---|
| |