| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1416 |
|---|
| Symbol | |
|---|
| ID | 4909095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1326339 |
|---|
| End bp | 1326839 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640125166 |
|---|
| Product | PaREP1 domain-containing protein |
|---|
| Protein accession | YP_001056302 |
|---|
| Protein GI | 126460024 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0117064 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGAGTGC TTGAGTTCTA CCCACCGTGG AGAGACTTGA AGCGCTACGT CGAGGCTAGG
CTCAGGGAAG CGGAGTGGGA GGCCAAGCTG GCCGAGGAGT TTTTAGAAAA CGGCCTCCTC
CGAAACGCCG CCGGCAAGGC GTTTCAGGCG TGGAAGGCGG TGCTCGCAGC CGCGGCTGCT
CTTGCGAGAG AGCTAGTGGA GAAGCGCGTG CCTGGCTTCG TCGTGGATAG GCTGGGGAAG
AGGCGGCGCC GCGCCGACAT GGTCATCGCC CTAATGCCCA CGAGCAAGAT GCGCACCGTG
GCGGGGGCCC TCGCGGAGAA GTTCGGCTGG GAAGTGGTCT ACTTGACCTC CCTCGCCCTA
GACCTCCGCG AGTTTCAACA CAGCGGCGTT GACCCCGAGG GCGTCGCCAG CCGGTACACG
GACGTGAGAG ACGTAGAGAG AGACGTGCGG CACTTGGCGG AGAAGGCGCG GGAGTGGGCG
GCCAAGCTGA AAGCCTTTTA A
|
|---|
| Protein sequence | MGVLEFYPPW RDLKRYVEAR LREAEWEAKL AEEFLENGLL RNAAGKAFQA WKAVLAAAAA
LARELVEKRV PGFVVDRLGK RRRRADMVIA LMPTSKMRTV AGALAEKFGW EVVYLTSLAL
DLREFQHSGV DPEGVASRYT DVRDVERDVR HLAEKAREWA AKLKAF
|
|---|
| |