Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_1396 |
Symbol | |
ID | 4909169 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | - |
Start bp | 1309436 |
End bp | 1310947 |
Gene Length | 1512 bp |
Protein Length | 503 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640125146 |
Product | vinylacetyl-CoA Delta-isomerase |
Protein accession | YP_001056282 |
Protein GI | 126460004 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG2368] Aromatic ring hydroxylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0809413 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCATGG GTCTAAGGAC TGGGGATCAA TACGTGGAGG GCATAAAGAC GAGGAATAAG GCGAAGATTT ATGTACTCGG CAAGCGCGTG CACGACGTTA CTACAAACCT GTTTCTAAAG CCCTCCGTCC TCTCCTTCAA GGCCACCTTC GACGCTGCGT TTGAGGAAGA CACCCGCGAC TTGGCCAGAG TATACAGCCC CTTCGCGGGG GAGGAGGTGA ACCGCTTCAA CTCCATACAC ATGGGGCCCC AAGACTTGGT GGCCAAGGTG AAGCTGTTGA GGAAGCTCTC GCACAAGACT GGGACGTGCT TCCAGAGGTG TGTGGGGTGG GACGCGTTAA ACACGCTCTA CATTGTCACT AAGAAGTTGG CAGAGAAGGA GGGGAAGGGC ATCTACTACA AGAACTTCAT CAAATACCTG GAGTACGTCC AGAGGCGGGA CTTGGCCCTT GCGGGAGCGA TGACAGACGT GAAGGGGGTT AGGCCGCTAA AGCCCAGCGA GCAGCCTAAC CCAGACGCCT ATGTGAGAGT GGTGGAGGAG AGAGACGACG GGATCGTGGT CAGAGGGGCT AAGGCAAACA TCACGGGGAT CGCCGTGGTG GACGAGGTCG TCGTCATGCC CACTAGGGCG ATGACGGAGA AGGACGAGGT CTACGCCATA TCCTTCGCCA TTCCCCTTGA CACGGAGGGG GTGACTGTGG TCGTCGGGAG GCAGTTGAAC GATGCCAGGA GGCTTGAGGA GGGGGAGATC GACGGCTTGC CCTATATGTT CAACCACGAG GGGCTCTTGA TACTCGAGGA CGTGTATGTG CCTTGGGACA GGGTGTTTAT GTACAGAGAG TGGAAGTGGG CGGGGGTGCT CGTCGAGGTC TTCTCGGCCT ACCACCGCCA GGGCTATGCG GGCTGTAAGT CCGGCCTAGG CGACGTGATC ATCGGCGCGG CGTACAACTT GGCTAAGCAG ATCGGCGTCG CCGACAAGCC CCACGTGAGG GAGAAGCTCA CCGAGATGGT GTTTCTCAAC GAGACTATGT ACTCCGCCGG GCTGGCGGCC AGCTGGGAGG GGAAGAAGCT TGTGGAGGGA GACGGGGGCT GGTGGGTCAA CCCCATGTAC GCCAACGTCA CTAAGCACTT GGTCACGAGG TTCCCCTACG AGGTGTCTAG GCTGGCTCAC GACATTGCCG GGGGTCTTTT GGGCACGGCC CCCAGCGAGT TTGACCTTAA GAACGAGGAG GTGGGAAAGC TGGTGGCCAA GTACCTCCAG GGGGTCCCCG AGTTCACCGC CGAGGACAGG CTCAGGATGT TGAGGCTGTT GGAGAACACC AGCATAAGCG TGGCGTACCT AGTGGAGTCT GTCCACGGCG CCGGTAGCCC CCAGGCGCAG AGGATATCCA TGGAGAGGAT ATACGACTTC TACACAGTGG AGAAGATAGC CAAGTCGCTG GCGAGGATGG GCCAGAGAAA GGCAGACCCA CGGGTGGAGC CTCACAAGCC GACGGACAGC GAAAAGGCAT GA
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Protein sequence | MSMGLRTGDQ YVEGIKTRNK AKIYVLGKRV HDVTTNLFLK PSVLSFKATF DAAFEEDTRD LARVYSPFAG EEVNRFNSIH MGPQDLVAKV KLLRKLSHKT GTCFQRCVGW DALNTLYIVT KKLAEKEGKG IYYKNFIKYL EYVQRRDLAL AGAMTDVKGV RPLKPSEQPN PDAYVRVVEE RDDGIVVRGA KANITGIAVV DEVVVMPTRA MTEKDEVYAI SFAIPLDTEG VTVVVGRQLN DARRLEEGEI DGLPYMFNHE GLLILEDVYV PWDRVFMYRE WKWAGVLVEV FSAYHRQGYA GCKSGLGDVI IGAAYNLAKQ IGVADKPHVR EKLTEMVFLN ETMYSAGLAA SWEGKKLVEG DGGWWVNPMY ANVTKHLVTR FPYEVSRLAH DIAGGLLGTA PSEFDLKNEE VGKLVAKYLQ GVPEFTAEDR LRMLRLLENT SISVAYLVES VHGAGSPQAQ RISMERIYDF YTVEKIAKSL ARMGQRKADP RVEPHKPTDS EKA
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