| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1196 |
|---|
| Symbol | |
|---|
| ID | 4908778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1110438 |
|---|
| End bp | 1111241 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640124950 |
|---|
| Product | undecaprenyl pyrophosphate phosphatase |
|---|
| Protein accession | YP_001056087 |
|---|
| Protein GI | 126459809 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1968] Uncharacterized bacitracin resistance protein |
|---|
| TIGRFAM ID | [TIGR00753] undecaprenyl-diphosphatase UppP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTGGA TCGCCGGGCT TGTCCTAGGC GTGGTGCAGG GGGTAGCCGA GTGGTTGCCC
ATCAGTAGCA AGACCCAGGT GATGTTCGCC TCCATGTGGC TACTCGGCCT AGACCCCGGC
GTCGCATACT CGCTGGGGCT CTTCCTAGAG GCCGCGTCGG TGCTAGCCGC GTTGATATAC
TTCCGGCACA TCTACGCAAC AGCGCTTAGG GGCTTTCTGG GCCATCCAGA GGGAAGGCGC
TGGCTGGCCT ACTTCGTCAT GACCACCGCT GTGACGGGGG CCGTGGGAGT CCCGCTGTAC
GTGGCGGTTA GAAAGTCCAT GCCCGCGGGG GCCGCCGGGT GGCTCATGGC CGCGCTGGGG
GTTGCCGTCA TGTTAAACGC CTTTCTCCTA TCAAGGGCGA AGAGGGCCGC CGGGCTGAAG
GACTTTCGGG AGATTACTCT TAGAGACATG GCCCTAGTCG GCCTCGCCCA GGCAATCGCC
GTCCTCCCCG GGGTGAGCAG ATCTGGCGCA ACCACTACCA CGCTACTCCT CCTCGGCTAC
AAGCCGGAAG AGGCGTTCAA GGCCTCCTTC GCCCTAGTCC CCATAGCCGG GTTAGGCGCA
GCGGTGCTCT CATACGCCGC CGAGGGAGGC GCAGTGGCCA CTGCCACTGC GGCGCTGGCC
ATGGCGGTGG GCGTGGCGGT TAGCCTAGCC ACGATAGAGG CCTTACTCAG ATTTGCAAAA
AGCGGGAGAG CCGCGCTGGT AAACGCCGTG GTGGGGCTCA TCGCCGTGGC AGGCGGCTTA
GCCGCGTTAA TTAGACCAGT CTAA
|
|---|
| Protein sequence | MDWIAGLVLG VVQGVAEWLP ISSKTQVMFA SMWLLGLDPG VAYSLGLFLE AASVLAALIY
FRHIYATALR GFLGHPEGRR WLAYFVMTTA VTGAVGVPLY VAVRKSMPAG AAGWLMAALG
VAVMLNAFLL SRAKRAAGLK DFREITLRDM ALVGLAQAIA VLPGVSRSGA TTTTLLLLGY
KPEEAFKASF ALVPIAGLGA AVLSYAAEGG AVATATAALA MAVGVAVSLA TIEALLRFAK
SGRAALVNAV VGLIAVAGGL AALIRPV
|
|---|
| |