| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1073 |
|---|
| Symbol | |
|---|
| ID | 4910274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1011027 |
|---|
| End bp | 1012385 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640124825 |
|---|
| Product | geranylgeranyl reductase |
|---|
| Protein accession | YP_001055964 |
|---|
| Protein GI | 126459686 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0644] Dehydrogenases (flavoproteins) |
|---|
| TIGRFAM ID | [TIGR02032] geranylgeranyl reductase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGTG AAAATTTCGA TGTAGTGGTG GCTGGAGCGG GCACCGCCGG CTCCTACATC
TCCTATCTCT TGGCCAAGGC AGGGTTTAAG GTGGCGCTCC TCGAGTCTAA AAGTGGCAAC
GAGCTGGGTG TAAAGACCTG CGGCGATGGG CTTGGGCTAC ACCACGTGGA GCGCATGTCT
AGGCACCTAA CGCCTAACCC CAGGGTGTTT CAGAACAAGA TAGAGGGCGT GGAGCTCATA
AGCCCCGACG AGAGGACTAG GCTCTTGATA AGGGGGGAGG GCTACGTGCT GGACCGTTTT
GGCTGGGGCA AGTGGCTTAT AGAGGAGGCC GTGAGGGCTG GGGCGACTTT GTTTGAGGGC
CACACGGCCA CTGCGCCGAT CGTGGAAAAC GGAAGCGTCG TGGGGGTCAA GGCGGTGGAG
AGGAGGACGG GCTCGACCAA GGAGTTTAGG GCGAGGGTGG TGGTGGACTC CACGGGCTCT
GCGGCGGTGC TTAGGACGAA GCTGAGTGGG TGGCTTATCT CAGAGCCGTT GCACCCAGAG
GACGTCTCCC ACGCCTACAG GGAGATTGTA TACACGGAGG ACGAGCACGA ACGGCCTCAG
TACATCAAGA TATACCTCGA CATGGTGGTG GCGCCCGGCG GCTACTGGTG GATTTTCCCG
AGGAGTAGCA CCATGTTGAA CGTGGGGCTC GGCATATGGG GCGTCCTCAA GCTCAACCCC
AGGGCCCACT ACGAGAAGTA CATATTGCCC AGGTTCAAGG TGAGAGAGAA GTACCACATT
GGAGGAGGCT TTATACCTAC GAGGAGGCCG CTTAAGTCCC TCGTGGGCAA CGGCATTGTT
GCCCTAGGCG ACGCCGCGGC CGCCGTAAAC CCCATCCACG GCGGAGGCAT TGGGCAAGCC
CTTCTGACCG CGGAGCTCGC CTCGAGGACC ATTGAGAAGG CCTTCGCCAG AGGCGACTTT
TCGGAGGACT CGCTGTGGGA GTACAACGTG GCGTACATGA GGGAGTGGGG GTATAGGCAG
GCTCAGTTGG ACGTGTTGAG GCTGATGTTG CAGACGTTGG ACAACGACGA CTTGAACTTC
GGCTTGTCGA GGAAGATCCT GAACGAGGAT GAGATATACC ACCTAGCCGC GAAGGGGACA
GACCTCTCCC TCTTGGACAA GTTTAAGATT ATGATGCAGT TCATCGGCAG GCCCGGCCTC
CTCAAGAAGC TCTCCACCTC TGTCCAATAC GCAAAGGAGA TCGGCGACTT GTACTTACGC
TACCCGCAGA GCAAGGCAGA CATCGAGAGG TGGTACGCCG AAGTGGTGGC CAAGTACAAC
GAGTATCGGG AGAAGATTGG TCTCGGCCCT CTGCCCTAA
|
|---|
| Protein sequence | MSSENFDVVV AGAGTAGSYI SYLLAKAGFK VALLESKSGN ELGVKTCGDG LGLHHVERMS
RHLTPNPRVF QNKIEGVELI SPDERTRLLI RGEGYVLDRF GWGKWLIEEA VRAGATLFEG
HTATAPIVEN GSVVGVKAVE RRTGSTKEFR ARVVVDSTGS AAVLRTKLSG WLISEPLHPE
DVSHAYREIV YTEDEHERPQ YIKIYLDMVV APGGYWWIFP RSSTMLNVGL GIWGVLKLNP
RAHYEKYILP RFKVREKYHI GGGFIPTRRP LKSLVGNGIV ALGDAAAAVN PIHGGGIGQA
LLTAELASRT IEKAFARGDF SEDSLWEYNV AYMREWGYRQ AQLDVLRLML QTLDNDDLNF
GLSRKILNED EIYHLAAKGT DLSLLDKFKI MMQFIGRPGL LKKLSTSVQY AKEIGDLYLR
YPQSKADIER WYAEVVAKYN EYREKIGLGP LP
|
|---|
| |