| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1004 |
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| Symbol | |
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| ID | 4908943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 945680 |
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| End bp | 947101 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640124754 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001055895 |
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| Protein GI | 126459617 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATAACT ACGACGTAAA ATACGCGTGG AGAGTAACGC CAATTTTGGG ATCGGTGGCT
CTACTCGTGA TGTACACAGA GGCGATGCTA ATGCCGAGTC TGCCGAAGAT ACAGTCGGAG
TTCAACGTAA CTCCCGCAGA CGTCTCCTGG GTCTTAACCA TATACCTCAT AGTGGGCACC
ATAAGCGCGG CGCTCTTCGG AAGCTTGGGA GACATCTACG GCAAGAAGAA GATTTTGTCC
ATCATAATTT CGCTGTACGC CGCCGCGGTA ACGTTCACAG GCTACGCCCC CACGTTTGAA
ACTCTCCTAG TGGCTAGGGC AGTACAAGGC TTGGGCATGG CCATGTTCCC ACTGGCCTTT
TCCCTCATAA GAGAGCAGTT CCCTCCGCAA CTTGTCCCCA CCGCCCAAGG CGTCATAAGC
GCCATGTTTG GCGCAGGCAT TATAATAGCG CTGCCGACCG GGGCATACAT TGCGCAGAAC
TTCGGCTGGA GAGCTACATA CCACACGGCG ACGCCCTTGG CCGTGTTTTT GGCAATGGTA
ATCTGGATCT ACGTAAGAGA AGGCGCGTAC AAAACTCCGA GGAAAATAGA CTACCTGGGG
ATCTCCCTCT TTGGAACTGC CGCAGCTTCA ATGCTTCTGG CCATCTCCAA GGGCCCAGAC
TGGGGGTGGA CCTCCCCCAG AGTTATTACA CTGTTTCTAC TTTCCGTAGT TGCGTGGGCC
GTTTTTACCC TGCGCCAGTT GACCGCAGAC GAGCCGTTTC TCCCGAGGGA CATATTGAAT
AGGAACGTCG TGGCCAGTAC TATTGCAATT ATGATAGTGG CCTACGCCTT TCAAATGAAC
TCTCAAAACT TGACGTACCT CTTCCAAATG CCTCCTCCAT ACGGGTACGG ACTCACGGTG
TTGCAGACAG GGCTCTACAT GCTTCCAATA GCCGCCGTAC AGATAGTCGT GGCGCCGCTC
TCGGGGAGAC TTGTGTGGAG ACTTGGCGCA AAGGCCGTGG CAGTAGCCGG CGTAGTCTTC
GCAGTGGTGG GCTACCAACT GGCGGTCAGC CACTTATACA GCGGAGTGTG GACACTCATA
GGATACTTGA CAATCGCGTT TACGGGCCTA GCTCTCTTAA ACGTCTCACT GATAAACCTG
CTCACATTCT CAGTGCCCAG ACACAGGCTG GGCTCAGCCA CGGGGCTCAA CACAGTCTTC
AGAAACTTCG GCTCCGCCAT CGCCCCCTCC GTGGCTGGAA GCGTTTTGAC AAACTACAGC
ACGTATATAG CGTTTAACAC GCCCATGGGG CCCATGTACT TTTCTGTGCC CTCTAAAGAC
GCATACGTAA TAAACATCGA CATAGCCACC GCCATGTTTT TAATCACGCT AGTACCAATA
CTTTTATCCA AAGAAGTTTT GGGAAGGGGT GGAGGGACTT AA
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| Protein sequence | MDNYDVKYAW RVTPILGSVA LLVMYTEAML MPSLPKIQSE FNVTPADVSW VLTIYLIVGT
ISAALFGSLG DIYGKKKILS IIISLYAAAV TFTGYAPTFE TLLVARAVQG LGMAMFPLAF
SLIREQFPPQ LVPTAQGVIS AMFGAGIIIA LPTGAYIAQN FGWRATYHTA TPLAVFLAMV
IWIYVREGAY KTPRKIDYLG ISLFGTAAAS MLLAISKGPD WGWTSPRVIT LFLLSVVAWA
VFTLRQLTAD EPFLPRDILN RNVVASTIAI MIVAYAFQMN SQNLTYLFQM PPPYGYGLTV
LQTGLYMLPI AAVQIVVAPL SGRLVWRLGA KAVAVAGVVF AVVGYQLAVS HLYSGVWTLI
GYLTIAFTGL ALLNVSLINL LTFSVPRHRL GSATGLNTVF RNFGSAIAPS VAGSVLTNYS
TYIAFNTPMG PMYFSVPSKD AYVINIDIAT AMFLITLVPI LLSKEVLGRG GGT
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