| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0948 |
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| Symbol | |
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| ID | 4909770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 895223 |
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| End bp | 896500 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640124696 |
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| Product | UbiD family decarboxylase |
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| Protein accession | YP_001055839 |
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| Protein GI | 126459561 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCTCC GGGACGTCGT AAGTTCTCTC GACGTCGAAT ATTTCGACCC GCCCTACGGC
GAGTTCACCA TTGCTAGAAT ATTGAAGGCT ACTGAGGGGA GGAAGACGCC CGTATTCAGA
GGCGTGGGAG ATGGGTTTAC TGGGGTGGGA AATCTCGTGG ACACTAGGGC GAAGCTTTTC
GCGTTCTTAG GCGTATCTAG CGACGAGGAG GCGTATACAA AGCTCCTATC CGCTGTGGAG
AACCCGGGTA GAGCGGAGTT GGTTTCCACC TGGCGCGACA TGTACAGAGA AGTGGACTCT
CTGCGCAAAT TGCCCATGGT ACGCTACTAC GAAAAAGAGG CTACGCCGTA TATAACTTCG
GGAGTTGTAA TAGGCGTAGG GCCCCAAGGC GTCATGAACG CATCTATACA CAGGTTTTCG
CCGCTGGGAG ATAGAAGGGC CGTGGTGAGG CTTGTCCCAC GTCACCTATA CCAAATCTAC
AAAACCAACT TGCGCTACGG CAGAGAGACT CCAATAGCGT TGGCGTGGGG AGTCCACCCC
CTCGTCCTAC TCGCCGCCGC CACCTCTCCC CCCTACGGCG TGTTTGAACT AGACGTAGCC
GCCAAGCTTA TGGGCGGGCT TAAGATTATG GCGATGGACA ACGGAGCAGT GGCGCCCTTT
ATGGCCTCCG TAGTTATCGA GGGGTACTTA ACGGCGGAGT TGGCGACAGA GGGGCCCTTT
GTCGACATAG TGGGGGTCTA CGACAGAGTG AGGAAACAGC CCGTAGTCAA AGTTGAGAGG
ATTTACGTTC TGCGGGAGGA GGCATATGTG CATTACCTGC TCCCCGCTGG CTTAGAACAC
ATAATGCTTA TGGGGTTTGA GAAAGAGGCT AAGATCTGGA AGTTGGCAAA GTCGGCAGTG
CCCGGCGTGA GGAAGGTCAG GTTGACCAGG GGAGGGTTTG GCTGGCTAGT CGCCGTAATT
TCGCTGGATA AGTCTGTGGA AGGGGATGCT AAAAACGCCA TTTTGGCAGC CTTCGCCGCT
CACCCCAGTT TAAAAATTGC TATTGCAGTA GACAGCGACG TGGACCCAGA CGACCCAGTG
GCGGTGGAGT GGGCCATTGC CACGAGGCTA AGGGCCGACC GGGGCCTTTT CATAATCCCC
TATGTGAGGG GGTCGACTCT TGACCCAGTT GCCCTCAACG AGGAGGGGCT TACCCATAAG
ATTGGCATAG ATGCTACTAG GCCTTTAGAC GCAGACCCTG CGCTTTTCGA GAGGGCTAGG
ATTCCAGAAG ATTTTTAA
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| Protein sequence | MHLRDVVSSL DVEYFDPPYG EFTIARILKA TEGRKTPVFR GVGDGFTGVG NLVDTRAKLF
AFLGVSSDEE AYTKLLSAVE NPGRAELVST WRDMYREVDS LRKLPMVRYY EKEATPYITS
GVVIGVGPQG VMNASIHRFS PLGDRRAVVR LVPRHLYQIY KTNLRYGRET PIALAWGVHP
LVLLAAATSP PYGVFELDVA AKLMGGLKIM AMDNGAVAPF MASVVIEGYL TAELATEGPF
VDIVGVYDRV RKQPVVKVER IYVLREEAYV HYLLPAGLEH IMLMGFEKEA KIWKLAKSAV
PGVRKVRLTR GGFGWLVAVI SLDKSVEGDA KNAILAAFAA HPSLKIAIAV DSDVDPDDPV
AVEWAIATRL RADRGLFIIP YVRGSTLDPV ALNEEGLTHK IGIDATRPLD ADPALFERAR
IPEDF
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