Gene Pcal_0891 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0891 
Symbol 
ID4909036 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp848428 
End bp849417 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content62% 
IMG OID640124640 
Product3-deoxy-7-phosphoheptulonate synthase 
Protein accessionYP_001055783 
Protein GI126459505 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2876] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 
TIGRFAM ID[TIGR01361] phospho-2-dehydro-3-deoxyheptonate aldolase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTTATA TAGTCGATGG GCCTGAGAGG GGGAAGGCCT TGAGGGAGGA GCTGGAGTCG 
AGGGGGGTAC CGGCTTGGTA TATAGAGCTC TGGGGGCACT ACATAGTTGC CACGCCGCCG 
GGGGCGAGGA CCGAGGTCAA GACCCCCGTC AAGGCCGTCG TGGAGCTTAA GACCGACTAC 
CAGCTAGTGT CGCGGGAGTG GAAGAGGGAT CCAACGCCCG TGTTTATAGG GGATAGAGAA 
GTGCGGGAGG GCAAGGTCTT CATTATTGCG GGGCCTTGCT CAGTCGAGGG AGAGGAGCAG 
ATTATCTCTA CGGCGCTGGC CGTCAAAGAG GCTGGGGCAC ATGCGCTGAG GGGAGGGGCC 
TTCAAGCCGC GGACGAGCCC CTACGCCTTC CAAGGCCTGG GGGAGGCGGG GCTTAAGCTC 
TTGGCTAAGG CTAGGGAGGC CACTGGGCTC CCGGTGACCA CCGAGCTGAT GGACCCAGAG 
GACCTCCCGC TGGTGGCCAA GTACGCCGAC GCGATACAAG TGGGGGCCAG GAATATGCAG 
AATTTTACGT TGTTAAAGAA GCTGGGGAGG GCGGGGAAGC CCATACTGCT CAAGAGGGGG 
TTTGGCAACA CTGTGGAGGA GTGGCTACTG GCGGGGGAGT ACGTGGCTCT CCACGGGAAT 
GGGGGCGTGG TGTTCGTGGA GAGGGGGATT AGGACGTTTG ACCGCACTCT GCGTTTTACC 
CTGGACGTGG GGGCCATCGC CTACGTAAAA CAACACACTC ACTTGCCTGT GATAGGCGAC 
CCGAGCCACC CCGCCGGCGA CCGGCGCTAC GTCATTCCGC TCGCCTTGGC CATACTGGCG 
GCGGGGGCAG ACGGCCTAAT CGTCGAGGTG CACCCAGACC CAGACAAGGC GTGGAGCGAC 
GCCAAACAAC AACTCACCTT TGACCAGTTT AGGGAGCTTA TGGCTAAGGC GAGGGAGCTG 
GCCCGGGCTC TTGGGAAAGA GTTCCCGTAG
 
Protein sequence
MLYIVDGPER GKALREELES RGVPAWYIEL WGHYIVATPP GARTEVKTPV KAVVELKTDY 
QLVSREWKRD PTPVFIGDRE VREGKVFIIA GPCSVEGEEQ IISTALAVKE AGAHALRGGA 
FKPRTSPYAF QGLGEAGLKL LAKAREATGL PVTTELMDPE DLPLVAKYAD AIQVGARNMQ 
NFTLLKKLGR AGKPILLKRG FGNTVEEWLL AGEYVALHGN GGVVFVERGI RTFDRTLRFT 
LDVGAIAYVK QHTHLPVIGD PSHPAGDRRY VIPLALAILA AGADGLIVEV HPDPDKAWSD 
AKQQLTFDQF RELMAKAREL ARALGKEFP