Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_0214 |
Symbol | |
ID | 4909574 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | + |
Start bp | 215423 |
End bp | 216436 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640123966 |
Product | ABC transporter periplasmic-binding protein |
Protein accession | YP_001055117 |
Protein GI | 126458839 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4143] ABC-type thiamine transport system, periplasmic component |
TIGRFAM ID | [TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.308816 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAATAA GGGCCTTATT GGCAACGCTC ATAGTCGTCG CCGTGTTGAT AGTGGCCTTT TTGGCTCTTC AATCCCTTCA ACAGCCGCCA AAGAGGCTTG TCATCGTCGG CCCGGCTGGG ATCAGCGACT TGGGGAAGGC GCTTGCGAAA AAGTTCAGCG AGAAGTACGG CGTCAACGCC ACCTTTGTGC CCCTGGGCGG CGCGGTGGAG ATGGTGAACG AGCTTGTGCG CGCCAAGGAC AACCCGCCTT GGGACGTGGC CATCGGTGTG CCGGAGTTCT ACTACACCGT GCTCATCGAA CAGGGGGTCT TGTACTGCCC TGGGCTAAAG GTGGAGGGCG TCCCGGCAGA GGAGTTTTGG GACCCCCACG GCTGTGTATA CCCCCTGGAC AAGTCATACA TAGGCATTGT CTACAACGAG TCCGCCTTGG CCAAGCTCGG CCTACCGCCG CCGCAGACCC TCGACGACTT GTTAAAGCCT GAGTACAAGG GGCTTATCGC CTATCCCAAC CCCGTGCAGT CGGGGACGGG CCTCGCCGTC TTGTCGTGGA TTATGTCTGT CAAGGGCGAG GAGGAGGGAT GGCGCTTCTT GAAGCAGCTC GCCGGGCAAA TAGCCAAGGT GGGGTACCCC AGCGGCTTTA CCTCGCTAAG GAACGCCCTG AAGAGGGGGG ACGTGGTCAT TGCCCTCTCC TGGTACAGCC ACGCCATTGA CCCAGGCACG CCTCATATGA GGGCCGCCAC GTACAGTGCG TTTTTGTACA GAGAGGGGGT GGCTGTGTTG AAGAACGCCA AGAACCGCGA CCTCGCTGTG GAGTTTGTAA AATTTGCCTT GAGCAAGGAG GGGCAGGACT TGGTCGATCC CTACAACTAT ATGTTGCCAG TCCGCCCAGA CGCCGTGGTG GAAAACAACA AGGGGTTGCC CCAGCCTCAG ACAGTTGTGG TGTACAACCC CGCCCTGGGG TCTAAGGCCG ACGAGTGGAG ACTTAGATGG CAGAGAGAGA TAGCCTCCGG GTAA
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Protein sequence | MSIRALLATL IVVAVLIVAF LALQSLQQPP KRLVIVGPAG ISDLGKALAK KFSEKYGVNA TFVPLGGAVE MVNELVRAKD NPPWDVAIGV PEFYYTVLIE QGVLYCPGLK VEGVPAEEFW DPHGCVYPLD KSYIGIVYNE SALAKLGLPP PQTLDDLLKP EYKGLIAYPN PVQSGTGLAV LSWIMSVKGE EEGWRFLKQL AGQIAKVGYP SGFTSLRNAL KRGDVVIALS WYSHAIDPGT PHMRAATYSA FLYREGVAVL KNAKNRDLAV EFVKFALSKE GQDLVDPYNY MLPVRPDAVV ENNKGLPQPQ TVVVYNPALG SKADEWRLRW QREIASG
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