| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0207 |
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| Symbol | |
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| ID | 4909684 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 206229 |
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| End bp | 207344 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640123959 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_001055110 |
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| Protein GI | 126458832 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.979925 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATTAA TACAACGTTC TATGGATAAA AAAGTCGGCA TATTAATAGC AATCGTAGTG
GTAATTATCG CCGCAGTATT AGCCGTATGG CTCGCGTCGA CGCCTCCCCC CACTACCACT
CCCAAGCCCG CCACTCCATC TCCAACCACT ACAACTACAC AGCCCACCAC CACGCAGGCT
CCCACAGTCT CCAGAATAAC CATAGCCACA GGCGGAATTG GCGGGGTCTA CTACTACTAC
GGGTCCATAA TTGCCTCTAT TTTGAACAAT TACACAGACA TTAGAGCTAA CGCAATACAG
ACGGCGGCCT CTATTGACAA TCTTTTGCTA ATTAGAGACC GCGGCGTGGA GTACTGCGCC
ACTACGTTGC CCGACAGCGC ATATCTAGCG TACACAGGCC AGCATCCAAA ATTCGCCAAT
AAGACGGCGC CGATAGCCAT TCTATGGGCC ATGTACCCCA ACTACCTCCA CATAGTCACA
AAGGCCTCCA CGGGCATTAA GACGATATAC GACCTGAAAG GGAAGAGAGT CTCCACAGGC
GCGCCAGGTA GCGGCACTGA GGTAAATGCG CTATCTGTTC TACAACTGGT CGGCATAGAC
CCGGCAAAAG ACTTCGCCAA GTGGGAAAAA CTAGGTGTAC AGGAAAGCGC TAAGGCGCTT
GCAGACGGAA CAATAGACGC ATTCTTCTGG TCGGGCGGAC TGCCCACAGG CAGCATAGTC
GAGCTAAGTG CGCTTCTAAA ACAGCGGGGA GACCAAATTG TGCTAATCTC CATCCCCGAC
GACGTGATAA AGGCCTACGC AGAGAAATAC CCCGGCGTCG CGGCTAGGGG TGTAATACCC
GCGAGCGTAT ACGGCGCGCC TCAAGACGCC GTGACACTGG CATATTGGAA CTTCTTCGTA
TGTCACAAAG ACCTACCGGC AGACGTGGCC TACAAGATTA CAAAAGCCGT ATTCGAACAC
TTAGACATAC TCCAGAAGTC CGTGGCGGCG GCCAAAGACA CTAACCTAAA GAATGCGCTA
ATAGCGCTAG GCGGCAAAAT CCCCTACCAC CAAGGCGCCT TGAAATACTT CTGCGAAGCA
GGGCTGCAAC AAGCTTGTCA AGCATTATCA AAGTGA
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| Protein sequence | MKLIQRSMDK KVGILIAIVV VIIAAVLAVW LASTPPPTTT PKPATPSPTT TTTQPTTTQA
PTVSRITIAT GGIGGVYYYY GSIIASILNN YTDIRANAIQ TAASIDNLLL IRDRGVEYCA
TTLPDSAYLA YTGQHPKFAN KTAPIAILWA MYPNYLHIVT KASTGIKTIY DLKGKRVSTG
APGSGTEVNA LSVLQLVGID PAKDFAKWEK LGVQESAKAL ADGTIDAFFW SGGLPTGSIV
ELSALLKQRG DQIVLISIPD DVIKAYAEKY PGVAARGVIP ASVYGAPQDA VTLAYWNFFV
CHKDLPADVA YKITKAVFEH LDILQKSVAA AKDTNLKNAL IALGGKIPYH QGALKYFCEA
GLQQACQALS K
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