Gene Pcal_0114 details

Gene Information

• Locus tag: Pcal_0114
• Symbol: carB
• ID: 4910232
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 112058
• End bp: 115135
• Gene Length: 3078 bp
• Protein Length: 1025 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 640123865
• Product: carbamoyl phosphate synthase large subunit
• Protein accession: YP_001055018
• Protein GI: 126458740
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ); [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit; [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 20
• Fosmid unclonability p-value: 0.440832
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCGGACA TTAGAAAGGT CTTGGTAATA GGCTCGGGGG CCATTAAGGT GGCCGAGGCG 
GCGGAGTTCG ACTACTCTGG CTCACAGGCG CTTAAGGCGT TTAAGGAGGA GGGGATTGAG 
ACAGTGCTAG TGAACCCCAA CATAGCCACG ATACAGACCT CCAAGATTTT GGCGGACAGG 
GTCTACTTCA TCCCCATCCA AAGGCCGTTT TTAGAGGGGG TTTTAGAGAA GGAGAGGCCT 
GACGCAGTTG CCTGCGGCTT CGGGGGCCAG ACCGCGCTGT CAGCATGTGT AGAGTTAGAC 
GAATCAGGCG CCTTGGCCAA ATACGGCGTG AGAGTGATCG GCACGCCTGT GAGGGGGATA 
AGGAGGGCCT TGTCGCGGGA CTTGTTCCAA AGGGCGATGA GGGAGGCGGG GATCCCCACC 
CCTCCCAGCA AGCCGGCGCG GTCGCCCGAG GAGGCTCTCG CGGTGGCGGC TGAGATCGGG 
TACCCCGTGG TGGTGAGAGT GAGCTTCAAC CTCGGCGGCG CGGGGGCCTT TGTGGCAAAG 
ACCGAGGAGG CGCTTAGGGC CAGGGTGTAC AAGGCCTTTG CCCAGTCGGC CATAGGCGAG 
GTGTTGGTGG AGAAGTACTT AGAGGGGTGG AAGGAGGTGG AGTTTGAAGT GGTGCGCGAC 
TCATACGACA ACGTCGCGGC GGTGGTCTGC ATGGAGAACG TGGACCCCAT GGGGGTGCAC 
ACGGGCGACT CCATCGTGGT GGCGCCCTGC CTCACTCTGA CCGACGAGGA GTACCAGAAG 
GCCAGGGACA TCTCCATTGG GGTGGCGAGG GCGATTGAGC TAGTGGGCGA GGGGAACGTA 
CAAGTGGCCG TCAACTACGC TGGGCCAGAG CAGTACGCCA TTGAGACTAA CCCGCGTATG 
TCTCGCTCAA GCGCCTTGGC CTCCAAGGCC TCTGGCTACC CCCTGGCCTA CATAGCGGCT 
AAGCTGGCCC TGGGCTACCG CCTAGACGAA GTGTTAAACC AAGTGACCAG GCGCACAGTG 
GCTGCCTTTG AGCCCGCGCT GGACTACATA GTGGTTAAGC ACCCCAGGTG GGAGAACGAC 
CGCTTCGGCG TCGTGGAGGG GCTTGGCCCC GAGATGATGT CCATCGGCGA GGCCATGGGA 
ATTGGGAGAA CTCTTGAGGA GGCTTGGCAA AAGGCCGTGA GAATGATCGA CATTGGGGAG 
CCGGGGCTTG TGGGCGGGAG AATGTTCGAC GAGCTTACGC TGGAGGAAGC GGAGAGGTGT 
CTCGCCGAGT ATAGGCCATA CTGGCCCATA TGCGCCGCCA AGGCCATGTA CCTCGGCGTC 
CCCCTGGAGC GGGTCTATCA ATACGTCAAA GTGGACAAGT TCTTCCTAAG GGCCATTCAG 
CGCGTGGTGG AGTTCTACAA GAGGATGGAG AGAGGCGAGG CGGATCTTGA GGAGGCGAAG 
GTGCTGGGCT TCTCCGACGA GCAGATCGCG AAGGCCCTCC GCATAGGCGT GGAGGAGGTT 
AGGAAGATGC GGAGGAGGCC CGTGGTGAAG AAGATAGACA CGCTGGCGGG GGAGTGGCCT 
GCCGAGACTA ACTACCTATA CCTCACCTAC GGCGGCTACT ACGACGACGC GGCTCCCAAG 
GCCGACTTCC TCGTGGTGGG CGCAGGGGTG TTTAGAATTG GGGTAAGCGT CGAGTTCGAC 
TGGTCCACGG TGAACTTGGC AGTGGAGCTG AGGAACCGCG GGCATAGAGT GGCCATCTTG 
AACTACAACC CCGAGACTGT CTCCACGGAC TGGGACGTGG TGGACAAGCT CTACTTCGAC 
GAGATAACCG TGGAGAGGGT GTTGGACGTT GTGGAGAAGG AGGGGGGAGA CGTCGCGGTG 
GTGTTGTACG CAGGCGGCCA AATAGGCCAG CGCCTATACG TGCCGCTTGA GAGAGCTGGC 
GTCAAAATAG GGGGGACACG GGCCAGCTCT ATAGACGCCG CAGAGGATAG GTACAAGTTC 
TCCAAGCTCT TAGACAAGTT GGGCATTAGG CAACCGCCCT GGTTCACGGC CACGTCGATA 
GACGAGGCGT TGAAGCTCGC CGAGGAGCTC GGCTACCCCG TCCTCGTGCG GCCGAGCTAC 
GTGCTGGGCG GGACCTACAT GGCCGCGGTG TACAGCCCCG GGGAGCTTGC CGAGTTTTTA 
ACCAAGGCCG CCAAGGTCAG CGGGCGTTAC CCCGTGGTCG TGTCTAAGTT CATGCCCTGG 
GGCATAGAGG CAGAGGTGGA CGCGGTGTCA GACGGGCGTA GGCTCGTTGC TACGCCCATA 
GAGCACGTGG AGCCCCCCGG CGTCCACTCC GGCGACTCCA CCATGGTCCT CCCCCCGAGG 
AGGCTGGGCG ACTCGGCGAT CAAGAAGATG ATCGACGTAG TGCACTCGCT GGCCAGAGAG 
CTGGAGGTCA GGGGGCCTAT GAACGTACAA TTCCTCGTAA ACGACGACGT GTACGTCATA 
GAGGCAAACC TCAGGGTAAG CCGCTCCATG CCCTTTGTGA GCAAGGCCAC GGGGGTCAAC 
TACATGTCCC TAGTGGCCGA CGTGTTGACC AACGGCAGAT TGGCCACAGA CGAGGAGGTG 
GTGGCGCTTA GGCCCACTAA GTGGTGGGTC AAGTCGCCGC AGTTCTCCTG GTCTAGGCTC 
AGGGGGGCCT ACCCCCGCCT AGGCCCCGTC ATGTACAGCA CGGGGGAAGT GGCCGCAAAT 
GGGAAGACGT TTGAAGAGGC GCTCCTCAAA AGCTGGCTCT CGGCAACGCC AAACAAAATA 
CCGCAGAAGA CGGCCCTAGT CTACACCTAC GACGAGAGAG ATGCGGAGAA AATGAGACAC 
GCCGCCTCTC TGCTCTCCAC GAGGCTGGAG GTGTACAAGC CGGAGGAGTT GGGCGAGAAG 
GTGGTAGAGC TCCTCAAGTG GAGGAAGATA GACATAGTGA TGACGAGCGG CTATACGCCC 
CAGAGAGACT ACACAATTAG AAGAACCGCC GCAGACACTA ACACGCCGCT TGTCCTCGAC 
GCCACGCTGG CGGTGGAGTT GGCCAATGCC TTCCTCTGGT ACTACAACGG CGGGAGGCTG 
GAGGTAGAGC CATGGTAG 

 

Protein sequence

MPDIRKVLVI GSGAIKVAEA AEFDYSGSQA LKAFKEEGIE TVLVNPNIAT IQTSKILADR 
VYFIPIQRPF LEGVLEKERP DAVACGFGGQ TALSACVELD ESGALAKYGV RVIGTPVRGI 
RRALSRDLFQ RAMREAGIPT PPSKPARSPE EALAVAAEIG YPVVVRVSFN LGGAGAFVAK 
TEEALRARVY KAFAQSAIGE VLVEKYLEGW KEVEFEVVRD SYDNVAAVVC MENVDPMGVH 
TGDSIVVAPC LTLTDEEYQK ARDISIGVAR AIELVGEGNV QVAVNYAGPE QYAIETNPRM 
SRSSALASKA SGYPLAYIAA KLALGYRLDE VLNQVTRRTV AAFEPALDYI VVKHPRWEND 
RFGVVEGLGP EMMSIGEAMG IGRTLEEAWQ KAVRMIDIGE PGLVGGRMFD ELTLEEAERC 
LAEYRPYWPI CAAKAMYLGV PLERVYQYVK VDKFFLRAIQ RVVEFYKRME RGEADLEEAK 
VLGFSDEQIA KALRIGVEEV RKMRRRPVVK KIDTLAGEWP AETNYLYLTY GGYYDDAAPK 
ADFLVVGAGV FRIGVSVEFD WSTVNLAVEL RNRGHRVAIL NYNPETVSTD WDVVDKLYFD 
EITVERVLDV VEKEGGDVAV VLYAGGQIGQ RLYVPLERAG VKIGGTRASS IDAAEDRYKF 
SKLLDKLGIR QPPWFTATSI DEALKLAEEL GYPVLVRPSY VLGGTYMAAV YSPGELAEFL 
TKAAKVSGRY PVVVSKFMPW GIEAEVDAVS DGRRLVATPI EHVEPPGVHS GDSTMVLPPR 
RLGDSAIKKM IDVVHSLARE LEVRGPMNVQ FLVNDDVYVI EANLRVSRSM PFVSKATGVN 
YMSLVADVLT NGRLATDEEV VALRPTKWWV KSPQFSWSRL RGAYPRLGPV MYSTGEVAAN 
GKTFEEALLK SWLSATPNKI PQKTALVYTY DERDAEKMRH AASLLSTRLE VYKPEELGEK 
VVELLKWRKI DIVMTSGYTP QRDYTIRRTA ADTNTPLVLD ATLAVELANA FLWYYNGGRL 
EVEPW