| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4293 |
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| Symbol | |
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| ID | 4176083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 5164343 |
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| End bp | 5167378 |
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| Gene Length | 3036 bp |
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| Protein Length | 1011 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638057330 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_663846 |
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| Protein GI | 109900591 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.291525 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGTCTG TATTTTTTAT CATTTTGTTT TTGTCATTTT TTAGTTTCGA GATTGAGGCA
CAAGATACCT CAATAACGCA ATTCTCCGCA TCTGAAATTC AACAACAAGA TATTAGTCAA
CGTCTCACCT ACTTGAGCAT CGGTCATGCA CAGCTGCCAA ATTACAGATC TCCTCTAGAC
GATTGGTTGC TGATGTTTGA TAAACACGAC ATGCACGACG TGTTCAAAGA CAGATATGTC
ACCGCGTTCG AGATTTACAA CGACACGCAA AATAGCGAAT GGTTTATTCA TCCCTATGGC
TCTGTTGTAG AGTCAATTCA AGTTTCGGTT TATCAAGACT ACAGCCCTGT AGTTACGGCA
TTGAGCGGGC TAGATCACAC TAATGTCTAC CCTCTTCACT ACGGAAGTAA ACTTAAGATC
CCCCCAGGAC AAAGCGTGAC TGTGCTGATG GTGTTTAGCA GTGACTTCTT TTTTGCGCCA
CTAAAAATAG CATTACAAAG CGAACAGCAA ATGCGCGACA TAGTCGCAAC AGATAATATT
GTTTTATTTA TCTGCTTCGG TGTGTGCTTG GCATTAGGCA TATACAATTT ATTTATATTT
ATTGTTATGC GTGACAATCA GTACCTTTAT TACGCACTGT CTACGCTTTT TTATACCAGT
AGCTGGGCAG CCGTGTTCGG GGTGTTTGAG TATTTGCACA TGTTCAGCGC TAAAGATTGG
CTGATGGCCG GGTTTCTCTT GGGTTCTGCT TTTTCGGCTT TCTTTCAGAT CGCGTTTTTT
CGCTTAAATG TGTCATCTAA ACCAGCCATG TACTTATTAC TTGTACTTGG TTGTCTATGT
TTGTTGTTTT TGCCTTTAGC AATTTACAGT CAAGCGCTGG GCCTTATTAT TGTATCGATT
ATGACCTCTG CGGTTTTAAT GACAGGCTTG TTCATTGGCA TCATGTCTTG GATCAAGGGT
TATCGGCCAG CACGCTATTT CACTATCGCA ATACTGTGCG TCATCATCCC GAATATTATC
GGAAATTTAC TTAATCTGAG AATACTGACA GATATCAGCC TCGATATATA TTTGCTAGGT
TTTGTTGGCA TAGCAGCAGA TACCTTGATC CTTGCCTTCG CTTTAGCTGA AAAGATGCGA
TTAGTAAACT CTAGAAATGC TTTACTCAAG CAACAATTAG AACACAAAGT CAAAATCAGG
ACCCAAGCCC TAAGCGAAGC TAATCGAAAA TTAGCCAAAT CTAATCACGA ACTCGTTGAA
GCTAATTCCG CTAAGGATTA TTTCCTAGCT AATATGAGCC ATGAGATACG TACCCCTCTC
ACATCGATCA TAGGTTACGC TGACGGGATC CTATTAGGCG ATATAGACAA AGCCGAACAA
GAGCGCGTAA CAAATATTAT CTATCAAAAT GGAGCGCATT TACTTCGCAT CATCAACGAC
ATATTAGATT TGAGTAAAAT AGATGCGAAT AAACTGGAAT TTGACACCCA GCCTTGCCAC
TTATTTACCT TATTAGGAGA GATTGAATCG GTCGCAGGTA AACGTGCGCG AGACAAGGGC
ATAGGCTTTC ATGTTAATTA TGACTTCCCG TTACCAGATA AAATTATCAC TGATGCCGTT
AGGCTTAAGC AAATATTGTT TAATCTAACC AATAACGCCC TTAAATTCAC CCACAGCGGT
CATATCACGT TAAATGTAAG TATCGCCAAT ACCACCTTAA TAATTAAGGT AATCGATACA
GGTGAAGGGA TAAGCCAAAG CGATATGCAC AAGTTATTTC ATCCTTTTAC GCAAGCAGAC
AGCGTAATAA ACCGTCAGGT TGGCGGAACC GGCTTAGGCT TAAGTATTGC CAAACGATTA
GCTCAAGGCT TAGGCGGTGA TATATCCGCA CTTAGCCAAC TCAGAAAAGG CAGCACATTC
ACTGTCAGTA TTACGTTAGT CACACCCAAA AACGTACCTT GGCTAAGCAC CGTTGGTGAA
ATTGATATGT CTAATATTCA CCAAATTACC CACGAAACAG ACGTGCCTAA ATTTGGAGCA
TGCAAAGTAC TTCTTGCAGA TGATCATCCC AATAATCGAG AGCTTGTTGC CTTGTTACTT
AAGCGTATGA ATATTAACGT AGTGGAAGTG TCTGATGGCC ATCAAGCGCT GCAGGCTATG
CACACCGGCC AGTTTGATTT GTTATTGCTG GATATTCATA TGCCTGAATT AGACGGCATT
GAGACACTTA AAGCGATCCG TGGTTCTGGC AACCAAACAC CTGCTATAGC GTTAACCGCC
AATACCATGA AACACGAAGT AAACCACTAT TTGAGAATAG GATTTACTGA TCACTTGGCC
AAACCCATTG ATAGAGACGT GTTTTTCAGC AAAGTCAGTC GTTATCTAAA TCTGGCAAAA
GCGGACCAAT CAAATATCGA CAACGATAAA ATGCTGCCAC TTGTGCAAGG TTATATTACC
GATTTACGAG AAGAACTGGG TGCGATAGAG CAAGCCTGGG GTAAGCGGGA TTTAGCCAAA
ATATCGGCTT CGATACACAA AATTAAGGGC GCGGCGGGCT CGTTCGGCTT AGCTAATATT
GGTGATGTCT TCAGCCGAAT TGAGACATCA GTTAAAAACA ACGACGAAGT CGCCTTACTG
ACGATGCTTC CTCAAGCGTT AAGGCATGCT TATGCTTGTA TTAATTTGCC AAGCGTGAAC
GTAGCGTTAG CAATAGTCAA CTTCAACCAT TCATTTCCAC TTTATCTAGC CCAGTTACCT
TATGCCATAA GCCAATGTGA AAACCAACTT GGGGATATTG CCCAAGCGTT ACGTGCAGGG
GATGACATCG AGACGATGCA ATTAATTAAA AATGCGCAAG AGCTGTTCAA TCACTATGCT
TTTGAGAAAG GGGCATCTTT GTTAGATGAA ATAAGCTCCT CAATCGCACG TAAGGATTAT
AACTCTGATT ATCACATTAC CGCACTGCAA CAGGTCAGAA GTCTGCTGGA GAGTATCAAT
AGGGCGCTAA AAAGCCATAT TAAGAATATA GAGTAA
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| Protein sequence | MKSVFFIILF LSFFSFEIEA QDTSITQFSA SEIQQQDISQ RLTYLSIGHA QLPNYRSPLD
DWLLMFDKHD MHDVFKDRYV TAFEIYNDTQ NSEWFIHPYG SVVESIQVSV YQDYSPVVTA
LSGLDHTNVY PLHYGSKLKI PPGQSVTVLM VFSSDFFFAP LKIALQSEQQ MRDIVATDNI
VLFICFGVCL ALGIYNLFIF IVMRDNQYLY YALSTLFYTS SWAAVFGVFE YLHMFSAKDW
LMAGFLLGSA FSAFFQIAFF RLNVSSKPAM YLLLVLGCLC LLFLPLAIYS QALGLIIVSI
MTSAVLMTGL FIGIMSWIKG YRPARYFTIA ILCVIIPNII GNLLNLRILT DISLDIYLLG
FVGIAADTLI LAFALAEKMR LVNSRNALLK QQLEHKVKIR TQALSEANRK LAKSNHELVE
ANSAKDYFLA NMSHEIRTPL TSIIGYADGI LLGDIDKAEQ ERVTNIIYQN GAHLLRIIND
ILDLSKIDAN KLEFDTQPCH LFTLLGEIES VAGKRARDKG IGFHVNYDFP LPDKIITDAV
RLKQILFNLT NNALKFTHSG HITLNVSIAN TTLIIKVIDT GEGISQSDMH KLFHPFTQAD
SVINRQVGGT GLGLSIAKRL AQGLGGDISA LSQLRKGSTF TVSITLVTPK NVPWLSTVGE
IDMSNIHQIT HETDVPKFGA CKVLLADDHP NNRELVALLL KRMNINVVEV SDGHQALQAM
HTGQFDLLLL DIHMPELDGI ETLKAIRGSG NQTPAIALTA NTMKHEVNHY LRIGFTDHLA
KPIDRDVFFS KVSRYLNLAK ADQSNIDNDK MLPLVQGYIT DLREELGAIE QAWGKRDLAK
ISASIHKIKG AAGSFGLANI GDVFSRIETS VKNNDEVALL TMLPQALRHA YACINLPSVN
VALAIVNFNH SFPLYLAQLP YAISQCENQL GDIAQALRAG DDIETMQLIK NAQELFNHYA
FEKGASLLDE ISSSIARKDY NSDYHITALQ QVRSLLESIN RALKSHIKNI E
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