| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4126 |
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| Symbol | |
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| ID | 4175915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4963353 |
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| End bp | 4964735 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638057162 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_663679 |
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| Protein GI | 109900424 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.201465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTAACA TGTTAAAAAT AGGCACACTC ACAGGGCTTA TCTTTGCCCT TAGTGCCTGC
GCAGTAGGCC CGGATTATCA GGCGCCTAAT AAAGTTAACG ATATCGAGCT TACAGGTACG
TATGAGCAAG CGGAAAAGCT AACTAACTGG TGGCAAGCCT TCGGTGACGA AGATTTAAAT
CATTTAATTG ATGAAGCGCT TAAAGAAAAC CGGACGCTGT TTCAGGCTCA AGCCAACGTG
TTGCGTGCAT ATGCAATATT TCGTGATAGC CAGAACGACT TATTGCCAAA GGGTACGTTA
GACGCAGGTT ATTCAGCCTC AAAAAACCAG ACAATGCTTG AGTCTGACGA CGATACTATT
TTACGTGGCT ACAACACGGG AGCTAACCTC ACTTGGGACG TCGATTTGTT TGGCAAGGTG
CGACGCGCCG TTGAGGCATC ATTGGCCGAA GCGGAACAAG CCGACATTTT ATGGCATGAC
GCCCAATTAC AAATTATCAG CCAAGTAGCC GCTAGCTACG GTGACTATCG CGGTGCGCAA
TTCCGCTTGA AAGTGGCCGA GCAAAACTTA GCGAACTTAC GCCAAACCCG CACCATTGTA
AAAGCACGTT ATCAAGCTGG GTTTGCCTCT GAGTTAGAAA TGGCGCGTAT TAATGCCCAA
GTTTTCGAAG TTGAAGCCAC TGTACCGCAA ATGCGTACCC TGCTCGCCCG TGCAGATGCG
ACTTTGTCAG CATTACTGGC TAAAAAGCCC GGTGAGTTAG TGCTGAATGC GCAGCCAGAG
TTACCGCAGC TATCGCAACC TGTCGCATTA GTTCCTGGTG AAAACTACCT GCGTTACCGT
GCTGATGTGG CAAGCTCTGA GCGCGCATTA GCGGCCAGTA CTGCACGCAT TGGTGTGGCC
ACCGCAGATT TGTACCCGAA CGTATCGGTC AGCGGCTTCT TGGGCTTTTT GTCTGGCCCG
GGCTTAACCT TAGGGGGTGA TACTAAAAGC TGGAGCGTCG CCCCTACAAT CAGTTGGCAA
GCAGCTGATT TGGCTTCGGT CAAGGCGCGT ATTCGTCAGG CTAATGCCAG CACTGATATC
GCCTTAGCGC AGTTCGAGCA GCAAGTGTTT GATGCCCTAG CCGATATGCA GTTTTCACTG
CAAAGCTATA ACTTTAGTCG CCAGCAAGAG CAAAGTACGC ATCACCAATG GCAGGCAAGT
GAAAAGGCCA TGACCATAGC ACGTCAACGC TTTGAAGCAG GAAGCGGAGA GTTTCTTGAA
TTATTGGAAG CTCAACGTGA TGCCCTACAG AGCAGAGATC AACTTGCCTT GCTTGAACAA
CAAAGTTTCA ATCGGTTAGT CGATGTATAC CGTGCATTCG GTGGTGGTAT CAGCGTTATT
TAA
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| Protein sequence | MGNMLKIGTL TGLIFALSAC AVGPDYQAPN KVNDIELTGT YEQAEKLTNW WQAFGDEDLN
HLIDEALKEN RTLFQAQANV LRAYAIFRDS QNDLLPKGTL DAGYSASKNQ TMLESDDDTI
LRGYNTGANL TWDVDLFGKV RRAVEASLAE AEQADILWHD AQLQIISQVA ASYGDYRGAQ
FRLKVAEQNL ANLRQTRTIV KARYQAGFAS ELEMARINAQ VFEVEATVPQ MRTLLARADA
TLSALLAKKP GELVLNAQPE LPQLSQPVAL VPGENYLRYR ADVASSERAL AASTARIGVA
TADLYPNVSV SGFLGFLSGP GLTLGGDTKS WSVAPTISWQ AADLASVKAR IRQANASTDI
ALAQFEQQVF DALADMQFSL QSYNFSRQQE QSTHHQWQAS EKAMTIARQR FEAGSGEFLE
LLEAQRDALQ SRDQLALLEQ QSFNRLVDVY RAFGGGISVI
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