| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4073 |
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| Symbol | |
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| ID | 4175862 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4897152 |
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| End bp | 4898399 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638057109 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_663626 |
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| Protein GI | 109900371 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTTT TTGGCTACAA CAATAAAAAA CTCTATGCAG AAGATGTATC GCTGCACGAC
ATAGCCCAAA CTCACGGCAC CCCATGTTAT GTTTATTCAA AAGCGACAAT AGAGCGTCAC
TGGTTAGCAT TTGATAAAGC AGCTGGTGCC CACCCACATT TGGTTTGCTA TGCAGTGAAA
GCCAACTCAA ATTTAGGCGT GTTAAGCGTG CTTGCTAAGC TCGGCTCTGG CTTTGATATT
GTATCCGGTG GCGAACTTTT ACGCGTACTT AAAGCGGGCG GTGACCCAAC CAAAGTGGTG
TTTTCAGGTG TGGGAAAAAC GCCTGAAGAG ATTGCATTAG GCTTACAGCA CAACATCAAG
TGTTTTAATG TCGAATCCCC AGCAGAGCTA GAGCGCATCA GCCAAGTGGC TGTTGCTGAA
AACAAAATTG CACCGATTTC AATCCGCGTA AACCCAGATG TTGACGCGAA AACCCATCCA
TATATTTCTA CCGGCTTGAA AGCCAATAAG TTCGGTATTG AGCGTGAGCA AGCAGTAGAA
GTGTATCGCC ACGCTGCGTC CTTACCGAAT CTTGAGATCA AAGGAATAGA TTGCCACATA
GGCTCGCAAT TAACTGAAAT TGCGCCCTTT GTTGATGCCC TGGATAAACT GTTGGTTCTT
ATTGATGAGC TTGCCGAAAA TGGCATTACA TTGGCGCATT TAGATGTAGG CGGTGGCTTA
GGCGTAACGT ATAAAGATGA AACGCCTCCT CATCCTGATG AGTACACCCA AGCAATCGCG
CAGCGCATGC AAGGGCGTGA AGATTTACAG CTCATCTTTG AACCGGGCCG CGCCATTATG
GCCAATGCCG GTGTGCTACT GACCAAGGTT GAGTTCTTAA AACAAGGGGC TGAAAAGAAC
TTTGCGATTG TTGATGCCGC TATGAATGAT TTAATTCGCC CGGCATTATA CTCAGCTTGG
CAAAGCATCA TTCCACTTGA TACGTCTTTG ACGCGTGACA GTGCGGTTTA TGATGTTGTT
GGGCCCATTT GCGAGACAGG CGATTTCATT GGAAAAGAGC GTGAATTGGC GATCGATGCG
GGCGATTACC TCGCGGTACG CAGCGCGGGT GCTTATGGGT TTGTCATGGC GTCCAATTAC
AACAGTCGCT GTAAGGCCGC TGAAATCATG GTCGACAAGG ACCAGGTAAT GGTTGTTCGT
GAACGAGAAA CCCTTGAAGA CTTGTGGCGT GGTGAAAGCG TACTGTAA
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| Protein sequence | MDFFGYNNKK LYAEDVSLHD IAQTHGTPCY VYSKATIERH WLAFDKAAGA HPHLVCYAVK
ANSNLGVLSV LAKLGSGFDI VSGGELLRVL KAGGDPTKVV FSGVGKTPEE IALGLQHNIK
CFNVESPAEL ERISQVAVAE NKIAPISIRV NPDVDAKTHP YISTGLKANK FGIEREQAVE
VYRHAASLPN LEIKGIDCHI GSQLTEIAPF VDALDKLLVL IDELAENGIT LAHLDVGGGL
GVTYKDETPP HPDEYTQAIA QRMQGREDLQ LIFEPGRAIM ANAGVLLTKV EFLKQGAEKN
FAIVDAAMND LIRPALYSAW QSIIPLDTSL TRDSAVYDVV GPICETGDFI GKERELAIDA
GDYLAVRSAG AYGFVMASNY NSRCKAAEIM VDKDQVMVVR ERETLEDLWR GESVL
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