Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_4004 |
Symbol | |
ID | 4175788 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4820070 |
End bp | 4820705 |
Gene Length | 636 bp |
Protein Length | 211 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638057036 |
Product | pilin glycosylation protein |
Protein accession | YP_663558 |
Protein GI | 109900303 |
COG category | [R] General function prediction only |
COG ID | [COG0663] Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily |
TIGRFAM ID | [TIGR03570] sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCAATA AACTCATTAT TATAGGAGCA AGCGGTCATG GCAAAGTCGC GGCGGACTGC GCTGAAGTGA GCCGCCGATT TAGCGATATC CGCTTTTTAG ATCAAGCCTA CCCGCAGCAG CAAGCGAATG CCCACTGGAA CGTGGTAGGG CATGCGGATG ACGCTGCGAA ATATGTGGCA AGCGATACGT TATTTTTTGT GGCTATTGGC AATAATGCCA TCCGTGCGAA AGTAACGGCC GAATTACTAG CGCAGCATTG CTCCTTTGCA ACGCTGGTAC ACCCAAGTGC GCACGTCAGC CGGCACAGTG AAATTGGCTT GGGTTCGCTT ATTTGCGCCA ATGCGACAGT CAATATCGCC AGTAAAGTAG GTCAAGGGTG CATTATTAAT ACAGCGGCCA GTATTGACCA CGACTGCGCG TTAGGCGACT TCGTGCATGT TGCCCCTGGC TCACGGCTGG CGGGCAATGT GACTGTAGAT GAGCAAAGTT TTATCGGCAT CGGTAGTGCT GTTATTCAAG GTTGCACTAT TGGCCAACGC AGTATAGTGG GAGCCGGCTC CACTGTGCTT TCAAATGTTT CTGACCACAC GGTTGTAGCT GGTAGTCCAG CTAAGAAAAT TAATAATAAT AATTAA
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Protein sequence | MINKLIIIGA SGHGKVAADC AEVSRRFSDI RFLDQAYPQQ QANAHWNVVG HADDAAKYVA SDTLFFVAIG NNAIRAKVTA ELLAQHCSFA TLVHPSAHVS RHSEIGLGSL ICANATVNIA SKVGQGCIIN TAASIDHDCA LGDFVHVAPG SRLAGNVTVD EQSFIGIGSA VIQGCTIGQR SIVGAGSTVL SNVSDHTVVA GSPAKKINNN N
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