Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3988 |
Symbol | |
ID | 4175768 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4799610 |
End bp | 4801208 |
Gene Length | 1599 bp |
Protein Length | 532 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638057016 |
Product | AbgT putative transporter |
Protein accession | YP_663542 |
Protein GI | 109900287 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG2978] Putative p-aminobenzoyl-glutamate transporter |
TIGRFAM ID | [TIGR00819] p-Aminobenzoyl-glutamate transporter family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.025023 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCAAGACG CTAACGATCA GAAAAAACAA ACAAGCCAAG AGAACCCGAC AGGGTGGTTT TCGAGGTTTC TCGCAACAGT GGAATGGCTT GGAAATCTAC TACCACACCC TATTACATTG TTCGCTTTAC TTGCTACAGC GATTGTCATT ATCAGTGGTG TTTTAGGCTA CTTTGACGTC AGTGTAGTCG ACCCTCGCCC GCTTGATGCG AAAGGGCGTG CACCGGATGG CATGATACAA GTGGTATCGC TGCTTAACGC AGAAGGTTTG CAAAGAATAG TCACTCATTT AGTCACCAAC TTCACAGGCT TTGCCCCGTT AGGAACGGTG TTAGTGGCCT TGCTAGGGGT GTCGGTTGCT GAACATTCAG GCTTATTGTC AACCGCAATG CGTGCCATGG TCATGAATGC CTCTAAGCGC ATGGTAACCG TGGTTATTGT ACTGGCGGGT ATTTTGTCAA ACACGGCTTC AGAGTTGGGT TATGTGGTGT TGATACCGCT GGCGGCAATG ATATTTCATT CTTTGGGGCG TCACCCTCTT GCTGGTCTTG CGGCTGCATT TGCTGGTGTG TCTGGTGGTT ATAGCGCCAA TCTATTGCTC GGTACGGTCG ACCCCCTCTT GTCAGGTATC ACTGAAGCGG CAGCCCATAT GATTGATCAA GATTATGTGG TGGGCCCAGA AGTGAATTGG TACTTTATGT TTATCAGTAC TTTCTTAGTG GCGGGCCTAG GGGCATTTGT AACGGAGAAA ATCGTAGAGC CGCGTTTAGG CCAGTACGAC CCAAGTGAAG CCTCAATCGA GTTGGGCAAA CAAGAAATGA GTGCACCAAC AGCCTTAGAG AAAAAAGCGT TGCGCTGGGC AGGTGTAAGT TTTGCGCTAC TGTGTGGTGT GTTGGCGCTG ACCATAGTTC CAGAAAATGG CATTTTAAGA CACCCTGAAA CTGGTGCCGT TGCTGGCTCG CCATTTTTAA AAGGGATTGT TGCTTTTATT TTTATTACCT TTGCTGTGCC TGGATTCGTG TATGGGAAAA TCGCTGGTAC CATGAATAAT GATAAAGACG TCATCAATGC GATGTCTAAA AGTATGGGAG CGATGGGGCT ATACATCACC TTAGTATTTT TTGCCGCGCA GTTTGTGGCT TTCTTCAATT GGACAAATTT GGGGACTGTA CTTGCCGTCA AAGGTGCTGA GTTAATTCAA ACGATTGGTC TTGACGGCCC TGGCGTATTT ATCTTCTTTA TATTGATGTG TGGCATGGTG AACTTGTCCC TTGGCAGTGC TTCGGCCCAA TGGGCGGTTA CTGCTCCTAT TTTCGTTCCC ATGTTGATGC TGGTGGGTTT TGCTCCAGAG GTAATTCAAG CGGCGTACCG GATAGGAGAT TCAGTGACGA ATGTGATTTC ACCCATGATG AGTTACTTTG GGTTGATATT AGCTATCGCC GCGCAGTATA AAAAAGACTT AGGCATGGGT ACGTTAATTG CCACCATGTT GCCTTACAGT CTTGTATTCA TGGTGGGTTG GACCTTGTTA TTTTATGTGT GGGTATTTCT TTTAGGCATG CCGGTAGGGC CTGGGGCAGA GACTTATTAC ACTGGGTAA
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Protein sequence | MQDANDQKKQ TSQENPTGWF SRFLATVEWL GNLLPHPITL FALLATAIVI ISGVLGYFDV SVVDPRPLDA KGRAPDGMIQ VVSLLNAEGL QRIVTHLVTN FTGFAPLGTV LVALLGVSVA EHSGLLSTAM RAMVMNASKR MVTVVIVLAG ILSNTASELG YVVLIPLAAM IFHSLGRHPL AGLAAAFAGV SGGYSANLLL GTVDPLLSGI TEAAAHMIDQ DYVVGPEVNW YFMFISTFLV AGLGAFVTEK IVEPRLGQYD PSEASIELGK QEMSAPTALE KKALRWAGVS FALLCGVLAL TIVPENGILR HPETGAVAGS PFLKGIVAFI FITFAVPGFV YGKIAGTMNN DKDVINAMSK SMGAMGLYIT LVFFAAQFVA FFNWTNLGTV LAVKGAELIQ TIGLDGPGVF IFFILMCGMV NLSLGSASAQ WAVTAPIFVP MLMLVGFAPE VIQAAYRIGD SVTNVISPMM SYFGLILAIA AQYKKDLGMG TLIATMLPYS LVFMVGWTLL FYVWVFLLGM PVGPGAETYY TG
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