Gene Patl_3985 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3985 
Symbol 
ID4175765 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4795917 
End bp4797812 
Gene Length1896 bp 
Protein Length631 aa 
Translation table11 
GC content43% 
IMG OID638057013 
Productextracellular solute-binding protein 
Protein accessionYP_663539 
Protein GI109900284 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0580929 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAACA TCATTAACAT CCTATGGGGA GTTTTATTCT TTCTTAGCTT TTCGGCGATT 
GCTCAAGCAC AGCAGGTACT GTCTGTAGCG GTTTTGACCA CAAACGAACG TCAAAGTGAT
ATATACCGCG GGGCGTTTAA CGACTTTTCA ACCCAATCTA TTCAATACGA TGTCAAGGTA
ACCTTCTTTA GCGATAAAGA ATTCAAACGC TTATTACCTC GGTGGCTTGA AACGGGTGAA
TTCGACTTAC TTTATTGGCA GGCAGGAGAG CGCCTTCGCT CGCTGATTGC ACAAGATGTG
ATACAGCCAA TAGACTCTTT ACTGCCAAGG AAAGAGTTAC AAAGGTCTAT TCAACCCGCG
GTATTGCACA GTGTCACGCA GCAAAGCGTT TCCAATGAAG ACGCTGTAAC TTACGCGCTT
CCAATCGCAC AATACGGCTG GGGTTTTTAC TATAACAAAG CCGTTTTTCA GGAACTCAAC
GTAAAACCAC CCAATAACTG GGAAGAATTC ATAGCCCTTT GCCAGCGCAT AAAAGAGCAA
GGTGCAAATC CATTGGTCCA AGCAGTGCAA GAAGGCTGGC CCGCCCTTGC GTGGTTAGAT
TATTTGTCAT TAGACGCCGG CGGACTCGAA TTTCGTCAGC AAGTCATTGA TGGGCAAGCA
TTGGCAGGCC CAACGACAGA AACGTTTTTA AAACAATTTG AGCAGCTACT TTCAAAGGAA
TGGTTTTTTG CGCCGCAGCG TCACTGGACT TGGCAACAAG TAATGAAAGT AGTCGAAGCT
AAGCAAGCAG CAATGACATT AATGGGACAA TTTGCAGAAG GGACTATCGA CCCTTTGCGG
AACAAAGATA TCGGCTTTTT CTCGTTCCCT AAGGCTAATC AAATGAACCA AGCCGAGGTC
GCTCCGCTGG AGATATGGGT GGTGCCCCGC TCAGCTAAAA ACAAGGCTCA CTTGGCGCCA
TTGCTACGAT TTCTGTTGGC TAATAACAAA GAAATGGCCA TGGGGTTTGA TTCACTGCCT
GTGGTAAATA CTCAATTTAC TCAAGATTTG CCCAGCGACC GAGTTAAGAC TGCGGCCAAT
TCACTAGCAA ACTCAAGTAC ATTGGTGCAG TTTTTTGATC GTGAAGCCAA GGATGATATT
GCGAAAAATG CTGCGAGAAG TATCGCTAAA AGTATTTACG AAGATAACTC AGCCCCCTTG
CGTGAGGGAA TATTGAAGCG CACTCATATC GATTTTAAAA TGAATATTTA TGCGCAAGCC
GCTGAACTTC CTCAACTATA TTTTGCTTCA GTCACTGGAT TGAAAGAGTC GTTTTTTGCC
TCAAACTTGA TGCAAGATAT TTATCAGCAA TTGGGCTATG GCATATCAGT CACGCGGTTT
GGCTCCCTTG AAGCGTCACT TAACGCTTAT CGATTTGGCG GGGATGGAGA GTTAATCCGA
GTTGATGGTT ACAAACATCT TGCTCCTTCT TTGCAGCAAG TACCGGAACC TTTAGCCAAT
GTATCGTTTT ACTTGGTATG TAAAGATCTC GATATGTGTG CCACTAGCCT GCCAAAAGCG
AGTGAAGTAT CAGTTATTAA TGATTTACTG GTCGTTAATA ACTGGGCCAA CGAGAATCAG
GTTAAGCTCA AAAAGTACGA TACGGTCGAG ACCTTATTTC GTGCGTTCAA TGACAATGAA
CAAGGGTTAA TGGTGCTCGG TGCCAGCGAG ATTATCGACA ACAAATTGCT CATCAGTAAC
AGCTCCTACA GAACAATTAT TACTGTACCC CTTTATCACT ATGTGCATAA TAAACATAAG
GAATTAATTC CTTTGATTGA CAGTGCACTA AAAGAATATA AAAAAACTGA GCAATACCAA
ACGCTGAAAA ACCGATATTG GTTACAGCAT AACTGA
 
Protein sequence
MSNIINILWG VLFFLSFSAI AQAQQVLSVA VLTTNERQSD IYRGAFNDFS TQSIQYDVKV 
TFFSDKEFKR LLPRWLETGE FDLLYWQAGE RLRSLIAQDV IQPIDSLLPR KELQRSIQPA
VLHSVTQQSV SNEDAVTYAL PIAQYGWGFY YNKAVFQELN VKPPNNWEEF IALCQRIKEQ
GANPLVQAVQ EGWPALAWLD YLSLDAGGLE FRQQVIDGQA LAGPTTETFL KQFEQLLSKE
WFFAPQRHWT WQQVMKVVEA KQAAMTLMGQ FAEGTIDPLR NKDIGFFSFP KANQMNQAEV
APLEIWVVPR SAKNKAHLAP LLRFLLANNK EMAMGFDSLP VVNTQFTQDL PSDRVKTAAN
SLANSSTLVQ FFDREAKDDI AKNAARSIAK SIYEDNSAPL REGILKRTHI DFKMNIYAQA
AELPQLYFAS VTGLKESFFA SNLMQDIYQQ LGYGISVTRF GSLEASLNAY RFGGDGELIR
VDGYKHLAPS LQQVPEPLAN VSFYLVCKDL DMCATSLPKA SEVSVINDLL VVNNWANENQ
VKLKKYDTVE TLFRAFNDNE QGLMVLGASE IIDNKLLISN SSYRTIITVP LYHYVHNKHK
ELIPLIDSAL KEYKKTEQYQ TLKNRYWLQH N