| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3931 |
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| Symbol | |
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| ID | 4175711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4742442 |
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| End bp | 4744052 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056959 |
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| Product | pyridoxal-dependent decarboxylase |
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| Protein accession | YP_663485 |
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| Protein GI | 109900230 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCGTAG CTGAAGTCAG TTTAGAGCAT TTGTTTAGAG TGTTTACCAT GCCCGAAGGT
AAAGATTCTA AATTGGCTCA AATTGAGCAG CATCTGTCAG ATAACTTGGC TGATTTTTTG
TCTCAACACG TGGTGACCAA GGTCACGTCA CTTGAGCAAA TTGAACAAAG TTTCGCTGAA
TTTAATGTGC CTGAACACCC AGAGTTTGTC TCGGAGCACG CCGCTAATTT ACTCGAGAAG
TTAGTCGCTA ATTCTGTTAA CACCTATTCG CCAACGTTTA TCGGGCACAT GACCTCTGCC
TTACCTTATT TTCATTTATC GTTAGCTAAA TTATTAGTTG GCTTAAATCA AAATTTGGTC
AAAATTGAAA CCTCTAAAGC CTTTACGCCT TTGGAGCGTC AAGTATTGGG CATGATGCAT
GAACTGGTGT ATGCCCAGAA AAGTGACTTT TATAACACCT ATCTACATAA CGCTAATCAC
GCGCTTGGGG CATTTTGCTC TGGCGGCACG ATAGCGAACG TAACCGCCTT GTGGGTTGCA
CGCAACAAAG CTTTAGCCGC CGATGGCGTA TTTAAAGGGG TGGCCCGTGA AGGCTTAGCG
GCAGGTTTAG CTCATTATGG CTATAAGAAA ATGGCAATTT TGTCATCTCG CCGCGGTCAT
TACTCTCTGT CAAAATCTGT AGATATACTC GGGTTAGGCC GTGAACAACT CATCACGCTA
GACTGCCCTA CACAGCGTTT GTCGCCTGAA AAGGCACTTG CCTTCGGTAA AGAATACGCA
GAACAAGGCA ATAAAATTCT TAGCATAGTT GGCGTTGCTG GCACCACAGA AACAGGCCAT
GTAGATCCAT TAGATGAACT GGCTGACGTT GCCCAAGAGT TAGGTTGCCA CTTTCATGTG
GACGCGGCCT GGGGCGGTGC TACGTTATTC TCAAGCACCC ATAGAAAGAT CCTAAAGGGA
ATTGAACGCG CAGATTCAGT TACCATAGAT GCGCACAAGC AAATGTATGT GCCTATGGGC
GCGGGTATGG TGTTGTTTAA AGATCCTAAC GACAGCAATG CAGTACGTCA CCATGCAAAC
TACATACTAC GAGCTGGCTC AAAAGACTTG GGAGCCACGA CATTAGAAGG CTCGCGTAAC
GGTATGGCCA TGATGGTATA TGCGTCTTTG CATATATTTG GTCGCCAAGG TTACGAATTG
TTGATTGATC AAAGTATCGA GAAAGCGAAA GTTTTCGCTC GAATGATCCA GTCTCACCCA
GATTTCGAGT TGATTACGCA CCCTACTTTG TCGTTACTTA CTTATCGAGT GAATCCCCAA
GAGGTGCAGC AACAGGTCAA AGCCGACTTT TCGTTAAACG TAAAATTTAA TGAAAAACTC
GATAAACTCA CCGTATATGT ACAAAAGCAG CAACGTGAGG CGGGTAAGTC TTTTGTGTCG
CGTACCCGCT TACAAACTCA AACTTACGGC GATCAAACCA TGACAGTGTT TCGCGTGGTA
TTAGCAAATC CGTTAACCAC TGAAAATGAT TTACAAAACA TCCTGGATGA GCAAATCGCG
ATTGCCAGCA AAAGCCAAAA CTGGGCTGAG TTAACCGAAA AGGTAATCTA G
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| Protein sequence | MAVAEVSLEH LFRVFTMPEG KDSKLAQIEQ HLSDNLADFL SQHVVTKVTS LEQIEQSFAE
FNVPEHPEFV SEHAANLLEK LVANSVNTYS PTFIGHMTSA LPYFHLSLAK LLVGLNQNLV
KIETSKAFTP LERQVLGMMH ELVYAQKSDF YNTYLHNANH ALGAFCSGGT IANVTALWVA
RNKALAADGV FKGVAREGLA AGLAHYGYKK MAILSSRRGH YSLSKSVDIL GLGREQLITL
DCPTQRLSPE KALAFGKEYA EQGNKILSIV GVAGTTETGH VDPLDELADV AQELGCHFHV
DAAWGGATLF SSTHRKILKG IERADSVTID AHKQMYVPMG AGMVLFKDPN DSNAVRHHAN
YILRAGSKDL GATTLEGSRN GMAMMVYASL HIFGRQGYEL LIDQSIEKAK VFARMIQSHP
DFELITHPTL SLLTYRVNPQ EVQQQVKADF SLNVKFNEKL DKLTVYVQKQ QREAGKSFVS
RTRLQTQTYG DQTMTVFRVV LANPLTTEND LQNILDEQIA IASKSQNWAE LTEKVI
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