Gene Patl_3905 details

Gene Information

• Locus tag: Patl_3905
• ID: 4175685
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 4709833
• End bp: 4710468
• Gene Length: 636 bp
• Protein Length: 211 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 638056933
• Product: TetR family transcriptional regulator
• Protein accession: YP_663459
• Protein GI: 109900204
• COG category: [K] Transcription
• COG ID: [COG1309] Transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATCGG CAACCGATAA CACTTACAAA AAGGGGCAAA TCCGCAGAGA TAATATAGAG 
CAAATCATTA AAGCTGCAGC CAATGAGTTC AGTAACAAGG GATACGACGG GACAAGCATG 
AAGTCTATCG CAAAATCTGC AGGAATGACG CGCCCTAAAG TTCATTACTA TTTCAATGAT 
AAAGAAGAAG TTTACCAATC AACATTGCAA TATATATCCG AAAAGTGGGC TGATGCCACC 
ACAGTAATAA ACTTCGACGC AGACCCTTTC AACACACTAC AAAAATATAT ACATCAACAA 
GTGAGATTGG CATTTCATTG CCCTGAATTC TCTAAAATTG CGGTATTAGA TAACATCACG 
AATAAATCCA ACGCATTTTT TAGTCACAAT AAGGAAGCCA AAGAGCAGAT CGACTCACTC 
GTTTCGGCCA TCGAACATTG GATCGAAAAA GGGTTAATAC GTGACACGAA TCCTATACGG 
CTATTGTTTG CTATCTGGTC GATGACGTCT TGGTATTCGG TTAACAAAGA GCAGGCTCTT 
TACTTTGAAA ATCGCACTAA ATTTCAAGAG TCAGATATAG AACTTATCAG CATGGATATA 
AGTAATCTAA TATTGCCAAG CCTAGTGGTA ACGTAA 

 

Protein sequence

MKSATDNTYK KGQIRRDNIE QIIKAAANEF SNKGYDGTSM KSIAKSAGMT RPKVHYYFND 
KEEVYQSTLQ YISEKWADAT TVINFDADPF NTLQKYIHQQ VRLAFHCPEF SKIAVLDNIT 
NKSNAFFSHN KEAKEQIDSL VSAIEHWIEK GLIRDTNPIR LLFAIWSMTS WYSVNKEQAL 
YFENRTKFQE SDIELISMDI SNLILPSLVV T