| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3880 |
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| Symbol | |
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| ID | 4175660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4676420 |
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| End bp | 4677250 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056908 |
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| Product | DeoR family transcriptional regulator |
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| Protein accession | YP_663434 |
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| Protein GI | 109900179 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
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| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.46923 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAAGA AAGGCTTTAT CTTTCATTTC GAAACATATA TATTTCGAAA TATGCAAAAA
CGAAACACAC AACAACGACG TCGAGCGATT GTCGACCGTC TTCACTCACA TCGCGAAGTG
ATGGTGGATG AACTGGCGAA GCTTTTCTCT ACCTCAGAGG TCACTATCCG TAAAGATCTC
ACTGAGCTTG AAAACAACGG TCTTTTATTG CGCAAATTTG GCGGAGCAGT GCCGCTGCCG
CAAGACTCCT CTGAATTATC CAGTGAAAAA TTGTCTGCAC GTAAAATAGC GATTGCGAAA
GCCGCCGCCA CCTTAATTAA AGATCATAAC CGCATCATCA TTGATAGTGG CAGCACCACA
GCGGCCCTAA TTCCTGAGTT GGCAAGTAAG CTAGGTTTGG TCGTCATGAC AAACTCACTG
CATGTAGCCA ATTCACTGCT GGAAACCGAA AACGAGCCAA AGGTGTTGAT GACAGGTGGC
ACGTGGGATC CTCAATCACA TGCATTTCAA GGCAAAATGG CTGAACAAGT GCTGCGTGCA
TACAATTTCG ACCAGGCCTT TATTGGCGCA GCAGGTCTCG ATTTACAAAA GGGCTCAACC
ACGTTCAACG AATTGACCCA ACTAACCCAA GTCATGGCTG AAGTCTCTAG CGAGGTCGTG
GTCATGGCTG AATCAGAAAA ACTACAACGA AAAATACCTA ATGTTGAATT GCCTTGGCAG
GCGATATCGG TACTGGTTAC CGATGATTTA ATTGCTCAAA GCGATAAACA ACATATTGAA
CAACAGGGCG TGAAGGTTAT TTGCGCAACA ACTAAGTCAT TTGGAGCATA A
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| Protein sequence | MQKKGFIFHF ETYIFRNMQK RNTQQRRRAI VDRLHSHREV MVDELAKLFS TSEVTIRKDL
TELENNGLLL RKFGGAVPLP QDSSELSSEK LSARKIAIAK AAATLIKDHN RIIIDSGSTT
AALIPELASK LGLVVMTNSL HVANSLLETE NEPKVLMTGG TWDPQSHAFQ GKMAEQVLRA
YNFDQAFIGA AGLDLQKGST TFNELTQLTQ VMAEVSSEVV VMAESEKLQR KIPNVELPWQ
AISVLVTDDL IAQSDKQHIE QQGVKVICAT TKSFGA
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