| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3869 |
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| Symbol | |
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| ID | 4175649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4663366 |
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| End bp | 4663803 |
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| Gene Length | 438 bp |
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| Protein Length | 145 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056897 |
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| Product | cytosine deaminase |
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| Protein accession | YP_663423 |
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| Protein GI | 109900168 |
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| COG category | [F] Nucleotide transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0590] Cytosine/adenosine deaminases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0725206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGACAAAT TTATGCAAGC GGCGATTGAC GAAGCAAAAT TGGGCTTAGC AGAAGGCGGG
ATCCCCATTG GTTCAGTACT TGTACACAAT AATAAAATTA TCGGACGAGG TCACAATAAG
CGCGTGCAAA GTGGCAGCCC AATATTGCAC GGTGAGATGG ATGCGCTTGA AAATGCGGGG
CGCCAACCAG CACGCGTTTA TAAAGAATCG ACGCTCTACA CCACATTATC ACCTTGCAGC
ATGTGCAGCG GCACCATTCT ACTTTACGGT ATCCCAAAAG TAGTGATTGG AGAAAATCAA
ACGTTTATGG GCGAAGAGTC TCTTTTGACC TCTCGCGGGG TGAACACTCA GGTACTGCAT
AATCAGGAAT GCATCAGCCT GATGAATGAT TTCATTCGTG ATAAGCCCGA ACTGTGGAAC
GAAGATATCG GCGAATGA
|
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| Protein sequence | MDKFMQAAID EAKLGLAEGG IPIGSVLVHN NKIIGRGHNK RVQSGSPILH GEMDALENAG
RQPARVYKES TLYTTLSPCS MCSGTILLYG IPKVVIGENQ TFMGEESLLT SRGVNTQVLH
NQECISLMND FIRDKPELWN EDIGE
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